Strain sc|0025993

StrainInfo: SI-ID 447 ^T

Taxon

Agrobacterium rubi

Sample

Black raspberry

Cultures (24)

LMG 156 = ATCC 13335 = CIP 104332 = IAM 13569 = ICMP 6428 = LMG 17935 = NCPPB 1854 = PDDCC 6428 = DSM 6772 = IFO 13261 = CECT 4118 = CCRC 12820 = KCTC 2434 = ICMP 11833 = NBRC 13261 = CFBP 1317 = HAMBI 1812 = BCRC 12820 = KCTC 12454 = KACC 10739 = JCM 20918 = CGMCC 1.2558 = CFBP 5509 = CFBP 6448

Other Designations (11)

Keane 44 = Hildebrand boysenberry 1 = TR 3 = LMG 17935 QC 3/03 = ICPB TR3 = NZRCC 10203 = LMG156T QC 10/03 = Starr TR 3 = DSMZ 6772 = LMG 17935 QC 6/97 = TR3

Sequences (35)

• Gene Nucleotide:AF208483
  Agrobacterium rubi 23S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:X67228
  Agrobacterium rubi partial 16S rRNA gene, strain LMG 156
• Gene Nucleotide:AY752738
  Agrobacterium rubi strain ATCC 13335 DnaK gene, complete cds
• Gene Nucleotide:JX064266
  Agrobacterium rubi TruA (truA) gene, partial cds
• Gene Nucleotide:JX064338
  Agrobacterium rubi ThrA (thrA) gene, partial cds
• Gene Nucleotide:AY244376
  Agrobacterium rubi strain IAM 13569 23S ribosomal RNA gene, partial sequence
• Gene Nucleotide:JX064194
  Agrobacterium rubi hypothetical protein (SMc00019) gene, partial cds
• rRNA Operon Nucleotide:D12787
  Agrobacterium rubi gene for 16S rRNA, strain: IAM 13569
• Gene Nucleotide:AM295394
  Agrobacterium rubi partial rpoB gene for RNA polymerase beta subunit, strain LMG 17935
• Gene Nucleotide:FM213293
  Agrobacterium rubi partial hrcA gene for heat-inducible transcription repressor, type strain LMG 17935T
• Gene Nucleotide:FM213147
  Agrobacterium rubi partial rpoD gene for RNA polymerase sigma factor, type strain LMG 17935T
• Gene Nucleotide:AM181613
  Agrobacterium rubi partial gltA gene for citrate synthase, strain LMG 17935
• Gene Nucleotide:AM418834
  Agrobacterium rubi partial gyrB gene for DNA gyrase subunit beta, strain LMG 17935
• Gene Nucleotide:FM213245
  Agrobacterium rubi partial ribonuclease P RNA (rnpB gene), type strain LMG 17935T
• Gene Nucleotide:AM295440
  Agrobacterium rubi partial gap gene for glyceraldehyde 3-phosphate dehydrogenase, strain LMG 17935
• Gene Nucleotide:AM181687
  Agrobacterium rubi partial thrC gene for threonine synthase, strain LMG 17935
• Gene Nucleotide:AM182078
  Agrobacterium rubi partial dnaK gene for molecular chaperone Hsp70, stain LMG 17935
• Gene Nucleotide:EU812069
  Agrobacterium rubi strain LMG 17935 FusA (fusA) gene, partial cds
• Gene Nucleotide:AM418787
  Agrobacterium rubi partial atpD gene for ATP synthase beta subunit, strain LMG 17935
• Gene Nucleotide:EF217310
  Agrobacterium rubi strain LMG 17935 RNA polymerase beta chain (rpoB) gene, partial cds
• Gene Nucleotide:AM182936
  Agrobacterium rubi partial glnA gene for glutamine synthase, strain LMG 17935
• Gene Nucleotide:AM295444
  Agrobacterium rubi partial pnp gene for polyribonucleotide nucleotidyltransferase, strain LMG 17935
• Gene Nucleotide:FM213197
  Agrobacterium rubi partial pal gene for peptidoglycan-associated lipoprotein, type strain LMG 17935T
• Gene Nucleotide:AM182122
  Agrobacterium rubi partial recA gene for recombinase A, strain LMG 17935
• rRNA Operon Nucleotide:AM181759
  Agrobacterium rubi partial 16S rRNA gene, strain LMG 17935
• rRNA Operon Nucleotide:AF345276
  Rhizobium rubi strain DSM 6772 clone 1 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA, partial sequence
• rRNA Operon Nucleotide:AF345277
  Rhizobium rubi strain DSM 6772 clone 2 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA, partial sequence
• Genome Assembly:GCA_017873055
  Agrobacterium rubi DSM 6772
• rRNA Operon Nucleotide:D14503
  Agrobacterium rubi gene for 16S ribosomal RNA, complete sequence
• rRNA Operon Nucleotide:AY626395
  Agrobacterium rubi strain ICMP 11833 16S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:AB680385
  Agrobacterium rubi gene for 16S rRNA, partial sequence, strain: NBRC 13261
• Genome Assembly:GCA_000739935
  Agrobacterium rubi TR3 = NBRC 13261
• Gene Nucleotide:KF206814
  Agrobacterium rubi strain HAMBI 1812 recombinase A (recA) gene, partial cds
• Gene Nucleotide:KF206562
  Agrobacterium rubi strain HAMBI 1812 ATP synthase F1 beta subunit (atpD) gene, partial cds
• Gene Nucleotide:KF206905
  Agrobacterium rubi strain HAMBI 1812 RNA polymerase beta subunit (rpoB) gene, partial cds

Associated Publications (3)

• DOI: 10.1099/00207713-51-1-89
  Young JM, Kuykendall LD, Kerr A, Martínez-romero E, Sawada H (2001). A revision of Rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium Conn 1942 and Allorhizobium undicola de Lajudie et al. 1998 as new combinations: Rhizobium radiobacter, R. rhizogenes, R. rubi, R. undicola and R. vitis.
• DOI: 10.1071/BI9700585
  Keane P, New P, Kerr A (1970). Crown Gall of Stone Fruit II. Identification and Nomenclature of Agrobacterium Isolates
• DOI: 10.1099/00221287-59-1-57
  Lippincott JA, Lippincott BB (1969). Tumour-initiating Ability and Nutrition in the Genus Agrobacterium

Outside links and data sources

• StrainInfo DOI: 10.60712/SI-ID447.2

Retrieved 20 days ago via StrainInfo API (CC BY 4.0)

Metadata

Cannonical URL

https://seqco.de/s:25993

Local history

• Registered 29 days ago
• Last modified 20 days ago