Strain sc|0031011

StrainInfo: SI-ID 9858 ^T

Taxon

Flavobacterium columnare (not Flexibacter columnaris)

Sample

Diseased salmon, kidney (US)

Cultures (14)

LMG 10406 = ATCC 23463 = LMG 13035 = NCIMB 1038 = NCIMB 2248 = NCMB 1038 = CCUG 35197 = CIP 103531 = IFO 15943 = IAM 14301 = NCMB 2248 = NBRC 100251 = DSM 18644 = JCM 21141

Other Designations (5)

Ordal I-S-2cl = LMG 10406T QC 11/98 = I-S-2cl = I-S-2c1 = 1-S-2cl

Sequences (28)

• rRNA Operon Nucleotide:KC912650
  Flavobacterium columnare strain ATCC 23463 clone GI-16 16S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:EF554787
  Flavobacterium columnare strain ATCC 23463 23S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:KC912651
  Flavobacterium columnare strain ATCC 23463 clone GI-1 16S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:KC912648
  Flavobacterium columnare strain ATCC 23463 clone GI-14 16S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:AY577821
  Flavobacterium columnare strain ATCC 23463 16S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:KC912652
  Flavobacterium columnare strain ATCC 23463 clone GI-7 16S ribosomal RNA gene, partial sequence
• Gene Nucleotide:JF459989
  Flavobacterium columnare strain ATCC 23463 ferrichrome-iron receptor (fhuA) gene, complete cds
• rRNA Operon Nucleotide:KC912654
  Flavobacterium columnare strain ATCC 23463 clone GI-10 16S ribosomal RNA gene, partial sequence
• Gene Nucleotide:JF459990
  Flavobacterium columnare strain ATCC 23463 Fur-ferric uptake receptor gene, complete cds
• rRNA Operon Nucleotide:KC912647
  Flavobacterium columnare strain ATCC 23463 clone GI-5 16S ribosomal RNA gene, partial sequence
• Gene Nucleotide:FJ422919
  Flavobacterium columnare strain ATCC 23463 DnaJ (dnaJ) gene, complete cds
• rRNA Operon Nucleotide:KC912649
  Flavobacterium columnare strain ATCC 23463 clone GI-11 16S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:KC912653
  Flavobacterium columnare strain ATCC 23463 clone GI-13 16S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:AY754372
  Flavobacterium columnare strain ATCC 23463 16S-23S ribosomal RNA intergenic spacer, partial sequence
• Genome Assembly:GCA_007990835
  Flavobacterium columnare NBRC 100251 = ATCC 23463
• Genome Assembly:GCA_002530675
  Flavobacterium columnare NBRC 100251 = ATCC 23463
• rRNA Operon Nucleotide:KC912678
  Flavobacterium columnare strain F10-HK-A clone GI/II-26 16S ribosomal RNA gene, partial sequence.
• rRNA Operon Nucleotide:KC912679
  Flavobacterium columnare strain F10-HK-A clone GI/II-26 16S ribosomal RNA gene, partial sequence.
• rRNA Operon Nucleotide:KC912680
  Flavobacterium columnare strain F10-HK-A clone GI/II-26 16S ribosomal RNA gene, partial sequence.
• rRNA Operon Nucleotide:KC912681
  Flavobacterium columnare strain F10-HK-A clone GI/II-26 16S ribosomal RNA gene, partial sequence.
• rRNA Operon Nucleotide:KC912682
  Flavobacterium columnare strain F10-HK-A clone GI/II-26 16S ribosomal RNA gene, partial sequence.
• rRNA Operon Nucleotide:KC912683
  Flavobacterium columnare strain F10-HK-A clone GI/II-26 16S ribosomal RNA gene, partial sequence.
• rRNA Operon Nucleotide:KC912684
  Flavobacterium columnare strain F10-HK-A clone GI/II-26 16S ribosomal RNA gene, partial sequence.
• rRNA Operon Nucleotide:D12659
  Flavobacterium columnare gene for 16S ribosomal RNA, partial sequence, strain: NCIMB 2248
• rRNA Operon Nucleotide:AB078047
  Flavobacterium columnare gene for 16S rRNA, strain:IFO 15943
• rRNA Operon Nucleotide:AB030748
  Flavobacterium columnare DNA, 16S-23S intergenic spacer region, complete sequence
• rRNA Operon Nucleotide:AB010951
  Flavobacterium columnare gene for 16S rRNA, partial sequence, strain: IAM 14301 (= NCMB 2248)
• rRNA Operon Nucleotide:AB681150
  Flavobacterium columnare gene for 16S rRNA, partial sequence, strain: NBRC 100251

Associated Publications (7)

• DOI: 10.1111/j.1365-2761.2004.00576.x
  Grabowski LD, LaPatra SE, Cain KD (2004). Systemic and mucosal antibody response in tilapia, Oreochromis niloticus (L.), following immunization with Flavobacterium columnare.
• DOI: 10.1577/H07-047.1
  Darwish AM, Farmer BD, Hawke JP (2008). Improved method for determining antibiotic susceptibility of Flavobacterium columnare isolates by broth microdilution.
• DOI: 10.3390/microorganisms8121919
  Laanto E, Ravantti JJ, Sundberg LR (2020). Prophages and Past Prophage-Host Interactions Revealed by CRISPR Spacer Content in a Fish Pathogen.
• DOI: 10.1016/j.syapm.2021.126293
  LaFrentz BR, Kralova S, Burbick CR, Alexander TL, Phillips CW, Griffin MJ, Waldbieser GC, Garcia JC, de Alexandre Sebastiao F, Soto E, Loch TP, Liles MR, Snekvik KR (2021). The fish pathogen Flavobacterium columnare represents four distinct species: Flavobacterium columnare, Flavobacterium covae sp. nov., Flavobacterium davisii sp. nov. and Flavobacterium oreochromis sp. nov., and emended description of Flavobacterium columnare.
• DOI: 10.3354/dao070055
  Suomalainen LR, Kunttu H, Valtonen ET, Hirvela-Koski V, Tiirola M (2006). Molecular diversity and growth features of Flavobacterium columnare strains isolated in Finland.
• DOI: 10.1099/ijsem.0.001198
  Sheu SY, Chen YL, Chen WM (2016). Flavobacterium verecundum sp. nov., isolated from a freshwater river.
• DOI: 10.1099/ijsem.0.001575
  Park M, Joung Y, Nam GG, Kim S, Cho JC (2017). Flavobacterium inkyongense sp. nov., isolated from an artificial freshwater pond.

Outside links and data sources

• StrainInfo DOI: 10.60712/SI-ID9858.3

Retrieved about 1 month ago via StrainInfo API (CC BY 4.0)

Metadata

Cannonical URL

https://seqco.de/s:31011

Local history

• Registered 8 months ago
• Last modified about 1 month ago