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Authors Korzhenkov

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Korzhenkov, Aleksei A.


Publications
2

CitationNamesAbstract
Draft Genome Sequences of New Genomospecies “ Candidatus Pectobacterium maceratum” Strains, Which Cause Soft Rot in Plants Shirshikov et al. (2018). Genome Announcements 6 (15) Ca. Pectobacterium maceratum
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‘ARMAN’ archaea depend on association with euryarchaeal host in culture and in situ Golyshina et al. (2017). Nature Communications 8 (1) “Mancarchaeum acidiphilum”
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Draft Genome Sequences of New Genomospecies “ Candidatus Pectobacterium maceratum” Strains, Which Cause Soft Rot in Plants
ABSTRACT Investigation of collections of phytopathogenic bacteria has revealed some strains distinct from known Pectobacterium spp. We report here the draft genome sequences of five such strains, isolated during the period of 1947 to 2012. Based on comparative genomics, we propose a new candidate genomospecies of the genus Pectobacterium , “ Candidatus Pectobacterium maceratum.”
‘ARMAN’ archaea depend on association with euryarchaeal host in culture and in situ
AbstractIntriguing, yet uncultured ‘ARMAN’-like archaea are metabolically dependent on other members of the microbial community. It remains uncertain though which hosts they rely upon, and, because of the lack of complete genomes, to what extent. Here, we report the co-culturing of ARMAN-2-related organism, Mia14, with Cuniculiplasma divulgatum PM4 during the isolation of this strain from acidic streamer in Parys Mountain (Isle of Anglesey, UK). Mia14 is highly enriched in the binary culture (ca. 10% genomic reads) and its ungapped 0.95 Mbp genome points at severe voids in central metabolic pathways, indicating dependence on the host, C. divulgatum PM4. Analysis of C. divulgatum isolates from different sites and shotgun sequence data of Parys Mountain samples suggests an extensive genetic exchange between Mia14 and hosts in situ. Within the subset of organisms with high-quality genomic assemblies representing the ‘DPANN’ superphylum, the Mia14 lineage has had the largest gene flux, with dozens of genes gained that are implicated in the host interaction.
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