JSON

Genome sc|0000100

Name

Not registered

Database

NCBI Assembly

Accession

GCA_001805815.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_001805815.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.18% (automated estimate: 92.5%)
  • Contamination: 1.82% (automated estimate: 1.9%)
  • Quality: 89.08 (automated estimate: 83.0)
Ribosomal and transfer RNA genes
  • 0 16S rRNAs (automated estimate: 2)
  • 1 23S rRNA (up to 100.0%) (automated estimate: 2)
  • tRNAs for 19 amino acids (automated estimate: 19)
Sequencing depth
15.99 ×
Source
Other features
  • G+C Content: 63.15% (automated estimate: 63.14%)
  • Coding Density: 93.74%
  • Codon Table: 11
  • N50: 47,310 bp
  • Contigs: 62
  • Largest Contig: 102,786 bp
  • Assembly Length: 1,702,408 bp
  • Ambiguous Assembly Fraction: 0.3%
Submitter comments
Genome completeness estimates were determined with CheckM2 and by manually removing the systematically absent markers across the phylum from the CheckM1 marker set. This resulted in an increased completeness estimate compared to automated completeness estimates with the standard bacterial marker set via the CheckM1 pipeline.
Automated checks
Complete
Edit genome data
Last modified about 1 year ago


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