Genome sc|0001019

Genomics

Accession

NCBI Assembly:GCA_031254875.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 97.2%
• Contamination: 3.7%
• Quality: 78.7

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 79.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 18 amino acids

Sequencing depth

97.0 ×

Source

• BioSample: SAMN21241301
• BioSample: SAMN19322070

Other features

• G+C Content: 43.8%
• Coding Density: 80.85%
• Codon Table: 11
• N50: 30,300 bp
• Contigs: 123
• Largest Contig: 100,461 bp
• Assembly Length: 2,295,504 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified 2 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN21241301
• BioSample: SAMN19322070

Date

Collection Date: 2017-06-19

Location

Lat Lon: 3.381958 N 11.463214 E

Toponym

Geo Loc Name: Cameroon: Ebogo II, Mbalmayo

Environment

Sample Type: metagenomic assembly

Isolation Source: termite gut

Env Broad Scale: terrestrial biome

Env Local Scale: woodland biome

Env Medium: tropical woodland biome

Other

Host: Polyspathotermes sulcifrons

Package

Ncbi Submission Package: MIMAG.host-associated.6.0 • MIMS.me.host-associated.6.0

Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated

All retrieved samples

• SAMN21241301: MIMAG Metagenome-assembled Genome sample from Candidatus Bathycorpusculum termitum
• SAMN19322070: Termite gut metagenome of Cubitermes c.f. sulcifrons from Ebogo II, Mbalmayo, Cameroon - Cus372

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Metadata retrieved 2 months ago