Genome sc|0001019


Database

NCBI Assembly

Accession

GCA_031254875.1

Genomics

Accession
NCBI Assembly:GCA_031254875.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.2%
  • Contamination: 3.7%
  • Quality: 78.7
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 79.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
97.0 ×
Source
Other features
  • G+C Content: 43.8%
  • Coding Density: 80.85%
  • Codon Table: 11
  • N50: 30,300 bp
  • Contigs: 123
  • Largest Contig: 100,461 bp
  • Assembly Length: 2,295,504 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2017-06-19
Location
Lat Lon: 3.381958 N 11.463214 E
Toponym
Geo Loc Name: Cameroon: Ebogo II, Mbalmayo
Environment
Sample Type: metagenomic assembly
Isolation Source: termite gut
Env Broad Scale: terrestrial biome
Env Local Scale: woodland biome
Env Medium: tropical woodland biome
Other
Host: Polyspathotermes sulcifrons
Package
Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

Metagenome of Polyspathotermes sulcifrons : gut microbiota


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