sediment untreated

BioSample Accession(s)

SAMN12630605, SRS5305412

collection_date

2016

INSDC secondary accession

SRS5305412

NCBI submission package

Metagenome.environmental.1.0

source_material_id

ut

organism

marine sediment metagenome

host

salt lagoon

geo_loc_name

Mexico: Baja California

lat_lon

30.213 N 114.663 W

isolation_source

marine sediment

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2019-08-24

ENA-LAST-UPDATE

2019-08-27

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX6756439" alias="ut" center_name="SUB6212343" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX6756439</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6212343">ut</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Untreated</TITLE>
  <STUDY_REF accession="SRP219209">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP219209</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA521734</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>sediment DNA was randomly sheared and sequenced</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5305412">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5305412</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|lokesh.cbt@gmail.com">Untreated sediment</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>ut</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5305412</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA948779</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX6756439&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX6756439&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>