Genome sc|0001026


Database

NCBI Assembly

Accession

GCA_016793725.1

Genomics

Accession
NCBI Assembly:GCA_016793725.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.71%
  • Contamination: 3.69%
  • Quality: 72.26
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 21 amino acids
Sequencing depth
5.0 ×
Source
Other features
  • G+C Content: 69.6%
  • Coding Density: 93.7%
  • Codon Table: 11
  • N50: 12,920 bp
  • Contigs: 939
  • Largest Contig: 64,518 bp
  • Assembly Length: 9,754,155 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
CheckM2 was used for genome quality evaluation.
Automated checks
Complete

Last modified 4 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2019-09-20 • 2018-11-06 • 2018-11-07 • 2018-11-18 • 2018-12-23 • 2018-12-24 • 2018-02-18 • 2019-02-26 • 2018-04-20 • 2018-12-25 • 2019-03-03 • 2019-03-04 • 2018-11-09 • 2018-11-10 • 2019-01-02 • 2019-01-03 • 2019-04-03 • 2019-04-04 • 2019-01-29 • 2019-04-02
Location
Not detected
Toponym
Geo Loc Name: China: Nanjing • China:Nanjing
Environment
Sample Type: metagenomic assembly
Isolation Source: bioreactor sludge • R1-sludge • R2-sludge • R3-sludge • R0-sludge
Env Broad Scale: Sludge
Env Medium: Sludge flocs
Other
Not detected
Package
Ncbi Submission Package: MIMAG.wastewater.5.0Metagenome.environmental.1.0
Biosamplemodel: MIMAG.wastewater • Metagenome or environmental
All retrieved samples

Metadata retrieved 4 months ago

Sequencing Experiments

Hiseq of metagenome
Hiseq of metagenome
Hiseq of metagenome
Hiseq of metagenome
Hiseq of metagenome
Hiseq of metagenome
Hiseq of metagenome
Hiseq of metagenome
Hiseq of metagenome
Hiseq of metagenome
Hiseq of metagenome
Hiseq of metagenome
Hiseq of metagenome
Hiseq of metagenome: s1-2-2
Hiseq of metagenome: s1-2-3
Hiseq of metagenome: s1-3-2
Hiseq of metagenome: s1-3-3
Hiseq of metagenome: s2-1-2
Hiseq of metagenome: s2-1-3
Hiseq of metagenome: s2-2-2
Hiseq of metagenome: s2-2-3
Hiseq of metagenome: s2-3-2
Hiseq of metagenome: s2-3-3
Hiseq of metagenome: s3-1-2
Hiseq of metagenome: s3-1-3
Hiseq of metagenome: s3-2-2
Hiseq of metagenome: s3-2-3
Hiseq of metagenome: s3-3-2
Hiseq of metagenome: s3-3-3
Hiseq of metagenome: s0-2
Hiseq of metagenome: s0-3
Hiseq of metagenome: s1-1-2
Hiseq of metagenome: s1-1-3


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