BioSample Accession(s)

SAMN04254521

collection_date

not applicable

note

This biosample is a metagenomic assembly obtained from the activated carbon metagenome BioSamples: SAMN04231398, SAMN04231399, SAMN04231400, and SAMN04231401.

organism

Deltaproteobacteria bacterium Ga0077550

metagenomic

TRUE

collected_by

Ameet Pinto, Univerity of Glasgow

sample_type

metagenomic assembly

environmental-sample

TRUE

metagenome-source

activated carbon metagenome

isolate

Ga0077550

NCBI submission package

Microbe.1.0

geo_loc_name

USA: Ann Arbor

env_biome

drinking water (ENVO:00003064)

lat_lon

42.2814 N 83.74829999 W

biomaterial_provider

Lutgarde Raskin, University of Michigan

isolation_source

dual media filters at the Ann Arbor, Michigan drinking water treatment plant

BioSampleModel

Microbe, viral or environmental

ENA-FIRST-PUBLIC

2015-11-10

ENA-LAST-UPDATE

2021-09-26

Samples were collected from dual media filters at the Ann Arbor, Michigan drinking water treatment plant

BioSample Accession(s)

SAMN04231398, SRS1153142

collection_date

2011-07-29

INSDC secondary accession

SRS1153142

NCBI submission package

Metagenome.environmental.1.0

source_material_id

filter media

organism

activated carbon metagenome

metagenomic

TRUE

geo_loc_name

USA: Ann Arbor

samp_mat_process

DNA extraction (bead beating, phenol chloroform purification, precipitation)

lat_lon

42.2814 N 83.74829999 W

environmental-sample

TRUE

samp_collect_device

direct collection of filter media

isolation_source

dual media filter sample 24969_A2 from the Ann Arbor, Michigan drinking water treatment plant

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2015-11-03

ENA-LAST-UPDATE

2021-09-26

Samples were collected from dual media filters at the Ann Arbor, Michigan drinking water treatment plant.

BioSample Accession(s)

SAMN04231399, SRS1153313

collection_date

2011-02-13

INSDC secondary accession

SRS1153313

NCBI submission package

Metagenome.environmental.1.0

organism

activated carbon metagenome

metagenomic

TRUE

geo_loc_name

USA: Ann Arbor

samp_mat_process

DNA extraction (bead beating, phenol chloroform purification, precipitation)

lat_lon

42.2814 N 83.74829999 W

environmental-sample

TRUE

samp_collect_device

direct collection of filter media

isolation_source

dual media filter sample 24970_A2 from the Ann Arbor, Michigan drinking water treatment plant

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2015-11-03

ENA-LAST-UPDATE

2021-09-26

Samples were collected from dual media filters at the Ann Arbor, Michigan drinking water treatment plant.

BioSample Accession(s)

SAMN04231400, SRS1153324

collection_date

2011-05-26

INSDC secondary accession

SRS1153324

NCBI submission package

Metagenome.environmental.1.0

organism

activated carbon metagenome

metagenomic

TRUE

geo_loc_name

USA: Ann Arbor

samp_mat_process

DNA extraction (bead beating, phenol chloroform purification, precipitation)

lat_lon

42.2814 N 83.74829999 W

environmental-sample

TRUE

samp_collect_device

direct collection of filter media

isolation_source

dual media filter sample 24971_A2 from the Ann Arbor, Michigan drinking water treatment plant

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2015-11-03

ENA-LAST-UPDATE

2021-09-26

Samples were collected from dual media filters at the Ann Arbor, Michigan drinking water treatment plant.

BioSample Accession(s)

SAMN04231401, SRS1153325

collection_date

2010-12-19

INSDC secondary accession

SRS1153325

NCBI submission package

Metagenome.environmental.1.0

organism

activated carbon metagenome

metagenomic

TRUE

geo_loc_name

USA: Ann Arbor

samp_mat_process

DNA extraction (bead beating, phenol chloroform purification, precipitation)

lat_lon

42.2814 N 83.74829999 W

environmental-sample

TRUE

samp_collect_device

direct collection of filter media

isolation_source

dual media filter sample 24972_A2 from the Ann Arbor, Michigan drinking water treatment plant

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2015-11-03

ENA-LAST-UPDATE

2021-09-26

Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

<EXPERIMENT_SET>
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Metadata as EBI XML

<EXPERIMENT_SET>
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  <TITLE>Ann Arbor Drinking water treatment plant metagenome</TITLE>
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  <DESIGN>
    <DESIGN_DESCRIPTION>Genomic DNA was sheared to smaller fragments using the Covaris between 400bp and 550bp.  The ends are repaired, A-tailed, adapters are ligated and then PCR amplified. Library prep was performed using NEB Next DNA library prep kit.</DESIGN_DESCRIPTION>
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