SeqCode Registry
cognitis nomina
About
Search
•
Login
Register
Genomes
sc|0000108
JSON
Genome sc|0000108
Name
“Danuiimicrobium aquiferis”
Database
NCBI Assembly
Accession
GCA_001804285.1
Genomics
Accession
NCBI Assembly:
GCA_001804285.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
96.43%
Contamination:
2.35%
Quality:
84.68
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 19 amino acids
Source
BioSample: SAMN04315821
Other features
G+C Content:
44.4%
Coding Density:
90.57%
Codon Table:
11
N50:
95,362 bp
Contigs:
69
Largest Contig:
234,349 bp
Assembly Length:
3,020,120 bp
Ambiguous Assembly Fraction:
0.0061%
Submitter comments
Completeness and contamination estimated with CheckM v. 2.
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2013-06-03
Location
Lat Lon:
39.5369 N 107.7828 W
Toponym
Geo Loc Name:
USA: Rifle, CO
Environment
Isolation Source:
Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly
Other
Not detected
Package
Ncbi Submission Package:
Metagenome.environmental.1.0
Biosamplemodel:
Metagenome or environmental
All retrieved samples
SAMN04315821
: Metagenome or environmental sample from Omnitrophica bacterium RIFCSPLOWO2_12_FULL_44_17
Metadata retrieved
2 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN04315821
×
collection_date
2013-06-03
note
This biosample is a genome obtained from the metagenome sample SAMN03842440
NCBI submission package
Metagenome.environmental.1.0
organism
Omnitrophica bacterium RIFCSPLOWO2_12_FULL_44_17
metagenomic
true
geo_loc_name
USA: Rifle, CO
lat_lon
39.5369 N 107.7828 W
environmental-sample
true
isolation_source
Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly
metagenome-source
subsurface metagenome
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2016-02-22
ENA-LAST-UPDATE
2021-02-28
Search
×
Names
Publications
Authors
Subjects