collection_date

2018-03-29

note

This BioSample is a metagenomic assembly obtained from the freshwater metagenome BioSamples: SAMN10909881 and SAMN10909884

organism

Candidatus Omnitrophota bacterium

env_broad_scale

Freshwater biome

metagenomic

1

sample_type

metagenomic assembly

environmental-sample

1

metagenome-source

freshwater metagenome

isolate

Baikal-deep-G204

NCBI submission package

Microbe.1.0

depth

1250m, 1350m

geo_loc_name

Russia: Lake Baikal

lat_lon

51.787400 N 104.939100 E

isolation_source

freshwater

BioSampleModel

Microbe, viral or environmental

ENA-FIRST-PUBLIC

2019-11-24

ENA-LAST-UPDATE

2023-04-17

collection_date

2018-03-29

INSDC secondary accession

SRS4353183

NCBI submission package

Metagenome.environmental.1.0

organism

freshwater metagenome

geo_loc_name

Russia: Lake Baikal

lat_lon

51.787400 N 104.939100 E

isolation_source

freshwater biome

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2019-11-30

ENA-LAST-UPDATE

2019-11-30

collection_date

2018-03-29

INSDC secondary accession

SRS4353184

NCBI submission package

Metagenome.environmental.1.0

organism

freshwater metagenome

geo_loc_name

Russia: Lake Baikal

lat_lon

51.787400 N 104.939100 E

isolation_source

freshwater biome

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2019-11-30

ENA-LAST-UPDATE

2019-11-30

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX5362889" alias="Lake Baikal - 1250 m" center_name="SUB5161938" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX5362889</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB5161938">Lake Baikal - 1250 m</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Metagenomic sequencing from freshwater Lake Baikal 1250 m sample</TITLE>
  <STUDY_REF accession="SRP185617">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP185617</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA521725</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Sequencing was performed using Illumina HiSeqXten (Novogene, Hong Kong)</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS4353183">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS4353183</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN10909881</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Lake Baikal - 1250 m</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>HiSeq X Ten</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS4353183</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA848362</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX5362889&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX5362889&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX5362890" alias="Lake Baikal - 1350 m" center_name="SUB5161938" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX5362890</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB5161938">Lake Baikal - 1350 m</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Metagenomic sequencing from freshwater Lake Baikal 1350 m sample</TITLE>
  <STUDY_REF accession="SRP185617">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP185617</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA521725</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Sequencing was performed using Illumina HiSeqXten (Novogene, Hong Kong)</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS4353184">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS4353184</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN10909884</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Lake Baikal - 1350 m</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>HiSeq X Ten</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS4353184</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA848362</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX5362890&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX5362890&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>