JSON

Genome sc|0000109

Name

“Taenariivivens baikalensis”

Database

NCBI Assembly

Accession

GCA_009691445.1

Genomics

Accession
NCBI Assembly:GCA_009691445.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 93.59%
  • Contamination: 1.59%
  • Quality: 85.64
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 46.97%
  • Coding Density: 92.55%
  • Codon Table: 11
  • N50: 40,565 bp
  • Contigs: 96
  • Largest Contig: 195,372 bp
  • Assembly Length: 2,536,118 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination estimated with CheckM v.2.
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2018-03-29
Location
Lat Lon: 51.787400 N 104.939100 E
Toponym
Geo Loc Name: Russia: Lake Baikal
Environment
Sample Type: metagenomic assembly
Isolation Source: freshwater
Env Broad Scale: Freshwater biome
Other
Depth: 1250m, 1350m
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 4 months ago


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