JSON

Genome sc|0000115

Database

NCBI Assembly

Accession

GCA_000954095.1

Genomics

Accession
NCBI Assembly:GCA_000954095.1
Type
Single-Cell Amplified Genome (SAG)
Estimated Quality Metrics
  • Completeness: 100.0% (automated estimate: 92.5%)
  • Contamination: 4.55% (automated estimate: 31.1%)
  • Quality: 77.25 (automated estimate: -63.0)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%) (automated estimate: 1)
  • 1 23S rRNA (up to 100.0%) (automated estimate: 1)
  • tRNAs for 21 amino acids (automated estimate: 20)
Sequencing depth
120.0 ×
Source
Other features
  • G+C Content: 35.75% (automated estimate: 35.75%)
  • Coding Density: 88.69%
  • Codon Table: 11
  • N50: 15,145 bp
  • Contigs: 656
  • Assembly Length: 3,145,901 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Need to provide a comment here on the discrepancy with our QC screens and the default estimate with CheckM
Automated checks
Failed: Genome processing bypassed: Inactive: Low quality genome


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