JSON

Genome sc|0000115

Name

Not registered

Database

NCBI Assembly

Accession

GCA_000954095.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_000954095.1
Type
Single-Cell Amplified Genome (SAG)
Estimated Quality Metrics
  • Completeness: 100.0% (automated estimate: 92.5%)
  • Contamination: 4.55% (automated estimate: 31.1%)
  • Quality: 77.25 (automated estimate: -63.0)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%) (automated estimate: 1)
  • 1 23S rRNA (up to 100.0%) (automated estimate: 1)
  • tRNAs for 21 amino acids (automated estimate: 20)
Sequencing depth
120.0 ×
Source
Other features
  • G+C Content: 35.75% (automated estimate: 35.75%)
  • Coding Density: 88.69%
  • Codon Table: 11
  • N50: 15,145 bp
  • Contigs: 656
  • Assembly Length: 3,145,901 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Need to provide a comment here on the discrepancy with our QC screens and the default estimate with CheckM
Automated checks
Failed: Genome processing bypassed: Inactive: Low quality genome
Edit genome data
Last modified about 1 year ago


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