Keywords: GSC:MIxS;MIGS:5.0

strain

missing

collection_date

2014-08-21

isol_growth_condt

missing

note

This BioSample is a metagenomic assembly obtained from the groundwater metagenome BioSample: SAMN07960352

ref_biomaterial

missing

env_feature

aquifer

organism

Candidatus Omnitrophica bacterium CG12_big_fil_rev_8_21_14_0_65_43_15

metagenomic

TRUE

sample_type

metagenomic assembly

environmental-sample

TRUE

metagenome-source

groundwater metagenome

isolate

CG12_big_fil_rev_8_21_14_0_65_43_15

NCBI submission package

MIGS.ba.water.5.0

depth

2 m

env_material

groundwater

num_replicons

missing

geo_loc_name

USA: Crystal Geyser near Green River, Utah

env_biome

subsurface

lat_lon

38.56 N 110.8 W

isolation_source

groundwater

BioSampleModel

MIGS.ba

ENA-FIRST-PUBLIC

2017-11-17

ENA-LAST-UPDATE

2021-02-28

collection_date

2014-08-21

INSDC secondary accession

SRS2647933

NCBI submission package

Metagenome.environmental.1.0

organism

groundwater metagenome

host

not applicable

geo_loc_name

USA: Utah, Grand County

GOLD Ecosystem Classification

Environmental | Aquatic | Deep subsurface | Groundwater | Unclassified

lat_lon

38.9383 N 110.1342 W

isolation_source

aquifer

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2017-10-31

ENA-LAST-UPDATE

2022-10-21

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX3348160" alias="JGI-SRA-86333" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX3348160</PRIMARY_ID>
    <EXTERNAL_ID namespace="JGI">JGI-SRA-86333</EXTERNAL_ID>
    <SUBMITTER_ID namespace="">JGI-SRA-86333</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Crystal Geyser CG12_big_fil_rev_8/21/14_0.65</TITLE>
  <STUDY_REF accession="SRP123255">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP123255</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA416587</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS2647933">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS2647933</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN07960352</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>AGATZ</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
      <LIBRARY_CONSTRUCTION_PROTOCOL>Regular (DNA)</LIBRARY_CONSTRUCTION_PROTOCOL>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS2647933</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA626854</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX3348160&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX3348160&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>