JSON

Genome sc|0000013

Name

Not registered

Database

NCBI Assembly

Accession

JAJEQV000000000

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:JAJEQV000000000
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 98.1%
  • Contamination: 4.7%
  • Quality: 74.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 59.0%)
  • 1 23S rRNA (up to 66.0%)
  • tRNAs for 20 amino acids
Sequencing depth
48.0 ×
Source
Other features
  • G+C Content: 43.57%
  • Coding Density: 89.35%
  • Codon Table: 11
  • N50: 134,411 bp
  • Contigs: 79
  • Largest Contig: 343,743 bp
  • Assembly Length: 5,183,745 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Edit genome data
Last modified about 2 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2020-09-22
Location
Lat Lon: 50° 46′ 37″ N, 6° 2′ 36″ E
View sampling location map
Toponym
Geo Loc Name: Germany: Aachen
Environment
Isolation Source: feces
Env Broad Scale: Human gut microbiome
Env Local Scale: Human gut
Env Medium: Feces
Other
Host: Homo sapiens
Rel To Oxygen: anaerobe
Isol Growth Condt: see SCD paper
Package
Ncbi Submission Package: MIGS.ba.human-gut.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.human-gut
All retrieved samples
Metadata retrieved about 2 months ago


© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license