Uncultivated genome recovered from an assembly of the SRX445325 metagenome.

quality_assessment_method_version

1.0.6

collection_date

not applicable

mapping_method

BWA (BWA-MEM)

INSDC secondary accession

SRS2033873

metagenome_source

gut metagenome

organism

Elusimicrobia bacterium UBA7019

environmental_sample

true

mapping_method_version

0.7.12-r1039

isolation-source

high methane producing sheep

quality_assessment_method

CheckM

subsrc_note

Genome binned from sequencing reads available in SRX445325 metagenome

metagenomic

true

assembly_method_version

4.4.1

assembly_method

CLC de novo assembler

sample_type

metagenomic assembly

contamination_estimated

2.25%

isolate

UBA7019

NCBI submission package

Microbe.1.0

genome_coverage

115.14

geo_loc_name

NULL

value

This BioSample is a metagenomic assembly obtained from the gut metagenome reads: SRR1222431.

completeness_estimated

96.63%

BioSampleModel

Microbe, viral or environmental

ENA-FIRST-PUBLIC

2017-02-27

ENA-LAST-UPDATE

2017-08-15

rumen from high methane producing sheep

phenotype

high methane producing

INSDC secondary accession

SRS429585

NCBI submission package

Generic.1.0

organism

gut metagenome

biome

sheep rumen

isolation-source

sheep rumen

specific host

Ovis aries

geo_loc_name

New Zealand

GOLD Ecosystem Classification

Host-associated | Mammals | Digestive system | Stomach | Rumen

collected-by

AgResearch Grasslands

BioSampleModel

Generic

ENA-FIRST-PUBLIC

2013-12-30

ENA-LAST-UPDATE

2022-10-21

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX2623916" alias="SRX445325.b14.bam" center_name="University of Queensland" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX2623916</PRIMARY_ID>
    <SUBMITTER_ID namespace="University of Queensland">SRX445325.b14.bam</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Elusimicrobia bacterium UBA7019</TITLE>
  <STUDY_REF accession="SRP093542">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP093542</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA348753</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>BWA (BWA-MEM) mapping of Elusimicrobia bacterium UBA7019 using version 0.7.12-r1039 and assembled with CLC de novo assembler 4.4.1 with a genome coverage of 115.14</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS2033873">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS2033873</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN06456393</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>SRX445325.b14.bam</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS2033873</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA543414</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX2623916&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX2623916&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX1079949" alias="Tag1174-1" center_name="AgResearch" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX1079949</PRIMARY_ID>
    <SUBMITTER_ID namespace="AgResearch">Tag1174-1</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>bacterial 16S rRNA gene amplicon sequences from rumen contents: Sample high_methane</TITLE>
  <STUDY_REF accession="SRP022254">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP022254</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA202380</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>see PMC4158751</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS429585">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS429585</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN02144231</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Tag1174-1</LIBRARY_NAME>
      <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>1000</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <LS454>
      <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
    </LS454>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS429585</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA274624</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1079949&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1079949&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX1079950" alias="Tag1174-2" center_name="AgResearch" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX1079950</PRIMARY_ID>
    <SUBMITTER_ID namespace="AgResearch">Tag1174-2</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>bacterial 16S rRNA gene amplicon sequences from rumen contents: Sample high_methane</TITLE>
  <STUDY_REF accession="SRP022254">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP022254</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA202380</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>see PMC4158751</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS429585">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS429585</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN02144231</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Tag1174-2</LIBRARY_NAME>
      <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>1000</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <LS454>
      <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
    </LS454>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS429585</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA274624</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1079950&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1079950&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX1079951" alias="Tag1234-1" center_name="AgResearch" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX1079951</PRIMARY_ID>
    <SUBMITTER_ID namespace="AgResearch">Tag1234-1</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>bacterial 16S rRNA gene amplicon sequences from rumen contents: Sample high_methane</TITLE>
  <STUDY_REF accession="SRP022254">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP022254</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA202380</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>see PMC4158751</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS429585">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS429585</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN02144231</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Tag1234-1</LIBRARY_NAME>
      <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>1000</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <LS454>
      <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
    </LS454>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS429585</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA274624</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1079951&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1079951&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX1079952" alias="Tag1234-2" center_name="AgResearch" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX1079952</PRIMARY_ID>
    <SUBMITTER_ID namespace="AgResearch">Tag1234-2</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>bacterial 16S rRNA gene amplicon sequences from rumen contents: Sample high_methane</TITLE>
  <STUDY_REF accession="SRP022254">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP022254</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA202380</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>see PMC4158751</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS429585">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS429585</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN02144231</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Tag1234-2</LIBRARY_NAME>
      <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>1000</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <LS454>
      <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
    </LS454>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS429585</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA274624</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1079952&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1079952&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX1079966" alias="Tag1333-1" center_name="AgResearch" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX1079966</PRIMARY_ID>
    <SUBMITTER_ID namespace="AgResearch">Tag1333-1</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>bacterial 16S rRNA gene amplicon sequences from rumen contents: Sample high_methane</TITLE>
  <STUDY_REF accession="SRP022254">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP022254</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA202380</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>see PMC4158751</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS429585">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS429585</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN02144231</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Tag1333-1</LIBRARY_NAME>
      <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>1000</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <LS454>
      <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
    </LS454>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS429585</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA274624</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1079966&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1079966&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX1079967" alias="Tag1333-2" center_name="AgResearch" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX1079967</PRIMARY_ID>
    <SUBMITTER_ID namespace="AgResearch">Tag1333-2</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>bacterial 16S rRNA gene amplicon sequences from rumen contents: Sample high_methane</TITLE>
  <STUDY_REF accession="SRP022254">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP022254</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA202380</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>see PMC4158751</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS429585">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS429585</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN02144231</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Tag1333-2</LIBRARY_NAME>
      <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>1000</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <LS454>
      <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
    </LS454>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS429585</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA274624</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

<EXPERIMENT_SET>
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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

<EXPERIMENT_SET>
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Metadata as EBI XML

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    <EXPERIMENT_LINK>
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Metadata as EBI XML

<EXPERIMENT_SET>
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  <DESIGN>
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Metadata as EBI XML

<EXPERIMENT_SET>
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  <TITLE>Tag1174-2 metatranscriptomic sample</TITLE>
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  <DESIGN>
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    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>300</SPOT_LENGTH>
        <READ_SPEC>
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        <READ_SPEC>
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          <READ_TYPE>Reverse</READ_TYPE>
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Metadata as EBI XML

<EXPERIMENT_SET>
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  <DESIGN>
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      </LIBRARY_LAYOUT>
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    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
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