Uncultured Elusimicrobia bacterium RGIG9669

collection_date

2018-11-22

organism

Elusimicrobiota bacterium

metagenomic

1

derived-from

This BioSample is a metagenomic assembly obtained from the gut metagenome BioSample: SAMN15830177

environmental-sample

1

metagenome-source

gut metagenome

isolate

RGIG9669

NCBI submission package

Microbe.1.0

source_material_id

9669

host

yak

geo_loc_name

not collected

lat_lon

not collected

isolation_source

ruminant gastrointestinal tract

sample-type

metagenomic assembly

BioSampleModel

Microbe, viral or environmental

ENA-FIRST-PUBLIC

2021-03-18

ENA-LAST-UPDATE

2023-03-01

collection_date

2018-11-22

INSDC secondary accession

SRS7270189

NCBI submission package

Metagenome.environmental.1.0

source_material_id

352

organism

gut metagenome

host

Yak

geo_loc_name

missing

lat_lon

missing

isolation_source

digesta samples

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2021-03-18

ENA-LAST-UPDATE

2021-03-18

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX9019306" alias="Yak_Omasum-2" center_name="SUB7928201" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX9019306</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB7928201">Yak_Omasum-2</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>luminal digesta samples</TITLE>
  <STUDY_REF accession="SRP278969">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP278969</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA657455</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>random</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS7270189">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS7270189</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN15830177</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Yak_Omasum-2</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS7270189</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1117881</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX9019306&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX9019306&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>