Genome sc|0001335


Database

NCBI Assembly

Accession

GCA_018433245.1

Genomics

Accession
NCBI Assembly:GCA_018433245.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.75%
  • Contamination: 1.12%
  • Quality: 92.15
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 42.0%)
  • 1 23S rRNA (up to 34.0%)
  • tRNAs for 20 amino acids
Sequencing depth
22.5 ×
Source
Other features
  • G+C Content: 35.1%
  • Coding Density: 93.97%
  • Codon Table: 11
  • N50: 219,880 bp
  • Contigs: 35
  • Largest Contig: 433,377 bp
  • Assembly Length: 1,938,615 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-01-29
Location
Lat Lon: 37.545015 N 122.227814 W
Toponym
Geo Loc Name: USA: Redwood City, CA
Environment
Sample Type: metagenomic assembly
Isolation Source: wastewater sludge anaerobic digester phosphite (DPO) enrichment
Env Broad Scale: wastewater sludge
Env Local Scale: phosphite (DPO) enrichment
Env Medium: sludge
Other
Ph: 7
Temp: 37C
Package
Ncbi Submission Package: MIMAG.miscellaneous.6.0MIMS.me.miscellaneous.5.0
Biosamplemodel: MIMAG.miscellaneous • MIGS/MIMS/MIMARKS.miscellaneous
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

short-read sequences of DPO enrichments from wastewater digester sludge


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