Genome sc|0001338

Genomics

Accession

NCBI Assembly:GCA_020328135.1

Type

Single-Cell Amplified Genome (SAG)

Estimated Quality Metrics

• Completeness: 96.63%
• Contamination: 1.5%
• Quality: 89.13

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 39.0%)
• 1 23S rRNA (up to 28.0%)
• tRNAs for 19 amino acids

Sequencing depth

50.0 ×

Source

• BioSample: SAMN21555667
• BioSample: SAMN21872210

Other features

• G+C Content: 36.0%
• Coding Density: 81.67%
• Codon Table: 11
• N50: 6,712 bp
• Contigs: 229
• Largest Contig: 28,081 bp
• Assembly Length: 1,121,256 bp
• Ambiguous Assembly Fraction: 0.02%

Automated checks

Complete

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Last modified 4 days ago

Sample Metadata

BioSample entries

• BioSample: SAMN21555667
• BioSample: SAMN21872210

Date

Collection Date: 2016-06-16

Location

Lat Lon: 41.806543 N 72.262216 W

Toponym

Geo Loc Name: USA: Connecticut

Environment

Sample Type: metagenomic assembly

Isolation Source: single protist cell from termite hindgut

Env Broad Scale: Forest

Env Local Scale: terrestrial

Env Medium: wood

Other

Host: Dinenympha sp. DS12 • termite

Package

Ncbi Submission Package: MIMAG.host-associated.6.0 • MISAG.host-associated.5.0

Biosamplemodel: MIMAG.host-associated • MISAG.host-associated

All retrieved samples

• SAMN21555667: MIMAG Metagenome-assembled Genome sample from Candidatus Endomicrobiellum dinenymphae
• SAMN21872210: MISAG Single Amplified Genome sample from Dinenympha sp. DS12

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Metadata retrieved 4 days ago