Genome sc|0001338

Name

Endomicrobiellum dinenymphae

Database

NCBI Assembly

Accession

GCA_020328135.1

Genomics

Accession

NCBI Assembly:GCA_020328135.1

Type

Single-Cell Amplified Genome (SAG)

Estimated Quality Metrics

Completeness: 96.63%
Contamination: 1.5%
Quality: 89.13

Ribosomal and transfer RNA genes

1 16S rRNA (up to 39.0%)
1 23S rRNA (up to 28.0%)
tRNAs for 19 amino acids

Sequencing depth

50.0 ×

Source

Other features

G+C Content: 36.0%
Coding Density: 81.67%
Codon Table: 11
N50: 6,712 bp
Contigs: 229
Largest Contig: 28,081 bp
Assembly Length: 1,121,256 bp
Ambiguous Assembly Fraction: 0.02%

Automated checks

Complete

Last modified 6 days ago

Sample Metadata

BioSample entries

Date

Collection Date: 2016-06-16

Location

Lat Lon: 41° 48′ 24″ N, 72° 15′ 44″ W

View map of sampling locations

Toponym

Geo Loc Name: USA: Connecticut

Environment

Sample Type: metagenomic assembly

Isolation Source: single protist cell from termite hindgut

Env Broad Scale: Forest

Env Local Scale: terrestrial

Env Medium: wood

Other

Host: Dinenympha sp. DS12 • termite

Package

Not detected

All retrieved samples

Metadata retrieved 6 days ago

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