Genome sc|0001340


Database

NCBI Assembly

Accession

GCA_031255495.1

Genomics

Accession
NCBI Assembly:GCA_031255495.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.38%
  • Contamination: 0.0%
  • Quality: 94.38
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 26.0%)
  • 0 23S rRNAs
  • tRNAs for 18 amino acids
Sequencing depth
94.0 ×
Source
Other features
  • G+C Content: 34.1%
  • Coding Density: 91.67%
  • Codon Table: 11
  • N50: 21,527 bp
  • Contigs: 75
  • Largest Contig: 77,918 bp
  • Assembly Length: 1,166,988 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-02-14
Location
Lat Lon: 9.337193 N 82.541386 W
Toponym
Geo Loc Name: Panama: Boquisco
Environment
Sample Type: metagenomic assembly
Isolation Source: termite gut
Env Broad Scale: terrestrial biome
Env Local Scale: woodland biome
Env Medium: tropical woodland biome
Other
Host: Calcaritermes temnocephalus
Package
Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

Metagenome of Calcaritermes temnocephalus : gut microbiota


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license