JSON

Genome sc|0001341

Name

Endomicrobiellum cryptotermitis

Database

NCBI Assembly

Accession

GCA_031257835.1

Genomics

Accession
NCBI Assembly:GCA_031257835.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.64%
  • Contamination: 0.0%
  • Quality: 90.64
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 18 amino acids
Sequencing depth
91.0 ×
Source
Other features
  • G+C Content: 31.1%
  • Coding Density: 86.24%
  • Codon Table: 11
  • N50: 59,104 bp
  • Contigs: 28
  • Largest Contig: 153,342 bp
  • Assembly Length: 1,051,938 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2017-05-31
Location
Lat Lon: 52.443245 N 13.287523 E
Toponym
Geo Loc Name: Germany: BAM Federal Institute for Materials Research and Testing, Berlin
Environment
Sample Type: metagenomic assembly
Isolation Source: termite gut
Env Broad Scale: terrestrial biome
Env Local Scale: woodland biome
Env Medium: tropical woodland biome
Other
Host: Cryptotermes dudleyi
Package
Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated
All retrieved samples
Metadata retrieved 14 days ago


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