JSON

Genome sc|0001343

Name

Not registered

Database

NCBI Assembly

Accession

GCA_031267715.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_031267715.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.76% (automated estimate: 92.5%)
  • Contamination: 0.0% (automated estimate: 0.0%)
  • Quality: 91.76 (automated estimate: 92.5)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 0.0%) (automated estimate: 1)
  • 0 23S rRNAs (automated estimate: 0)
  • tRNAs for 19 amino acids (automated estimate: 20)
Sequencing depth
92.0 ×
Source
Other features
  • G+C Content: 33.5% (automated estimate: 33.52%)
  • Coding Density: 78.34%
  • Codon Table: 11
  • N50: 592,480 bp
  • Contigs: 2
  • Largest Contig: 592,480 bp
  • Assembly Length: 758,044 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
The 16S fragment in the MAG is a contamination from another verrucomicrobial MAG from the same metagenome.
Automated checks
Complete
Edit genome data
Last modified about 1 year ago

Sample Metadata

BioSample entries
Date
Collection Date: 2013-11-14
Location
Lat Lon: 19.399181 N 101.000213 E
Toponym
Geo Loc Name: Thailand: Thung Chang
Environment
Sample Type: metagenomic assembly
Isolation Source: termite gut
Env Broad Scale: terrestrial biome
Env Local Scale: woodland biome
Env Medium: tropical woodland biome
Other
Host: Glyptotermes sp.
Package
Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated
All retrieved samples
Metadata retrieved about 1 year ago


© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license