Genome sc|0001346

Genomics

Accession

NCBI Assembly:GCA_031269945.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 90.57%
• Contamination: 1.12%
• Quality: 84.97

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 0 23S rRNAs
• tRNAs for 19 amino acids

Sequencing depth

91.0 ×

Source

• BioSample: SAMN21242096
• BioSample: SAMN19322088

Other features

• G+C Content: 32.4%
• Coding Density: 76.1%
• Codon Table: 11
• N50: 169,505 bp
• Contigs: 13
• Largest Contig: 238,254 bp
• Assembly Length: 808,055 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified 2 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN21242096
• BioSample: SAMN19322088

Date

Collection Date: 2017-05-21

Location

Lat Lon: 52.443245 N 13.287523 E

Toponym

Geo Loc Name: Germany: BAM Federal Institute for Materials Research and Testing, Berlin

Environment

Sample Type: metagenomic assembly

Isolation Source: termite gut

Env Broad Scale: terrestrial biome

Env Local Scale: woodland biome

Env Medium: tropical woodland biome

Other

Host: Neotermes castaneus

Package

Ncbi Submission Package: MIMAG.host-associated.6.0 • MIMS.me.host-associated.6.0

Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated

All retrieved samples

• SAMN21242096: MIMAG Metagenome-assembled Genome sample from Endomicrobium sp.
• SAMN19322088: Termite gut metagenome of Neotermes castaneus from BAM Federal Institute for Materials Research and Testing, Berlin, Germany - Nc350

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Metadata retrieved 2 months ago