JSON

Genome sc|0001348

Name

Endomicrobiellum mastotermitis

Database

NCBI Assembly

Accession

GCA_031272445.1

Genomics

Accession
NCBI Assembly:GCA_031272445.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.64%
  • Contamination: 0.0%
  • Quality: 90.64
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 34.0%)
  • 0 23S rRNAs
  • tRNAs for 19 amino acids
Sequencing depth
91.0 ×
Source
Other features
  • G+C Content: 31.0%
  • Coding Density: 84.9%
  • Codon Table: 11
  • N50: 62,036 bp
  • Contigs: 18
  • Largest Contig: 109,604 bp
  • Assembly Length: 795,254 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Last modified 2 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2019-04-08
Location
Lat Lon: 52.443245 N 13.287523 E
Toponym
Geo Loc Name: Germany: BAM Federal Institute for Materials Research and Testing, Berlin
Environment
Sample Type: metagenomic assembly
Isolation Source: termite gut
Env Broad Scale: terrestrial biome
Env Local Scale: woodland biome
Env Medium: tropical woodland biome
Other
Host: Mastotermes darwiniensis
Package
Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated
All retrieved samples
Metadata retrieved 2 months ago


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