Genome sc|0001349

Genomics

Accession

NCBI Assembly:GCA_031275795.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.63%
• Contamination: 0.0%
• Quality: 96.63

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

97.0 ×

Source

• BioSample: SAMN21241831
• BioSample: SAMN19322082

Other features

• G+C Content: 31.2%
• Coding Density: 89.29%
• Codon Table: 11
• N50: 33,804 bp
• Contigs: 49
• Largest Contig: 104,582 bp
• Assembly Length: 1,237,699 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified 2 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN21241831
• BioSample: SAMN19322082

Date

Collection Date: 2013-03-25

Location

Lat Lon: 26.0839646 N 80.2393931 W

Toponym

Geo Loc Name: USA: Fort Lauderdale Research & Education Center, Florida

Environment

Sample Type: metagenomic assembly

Isolation Source: termite gut

Env Broad Scale: terrestrial biome

Env Local Scale: woodland biome

Env Medium: tropical woodland biome

Other

Host: Incisitermes snyderi

Package

Ncbi Submission Package: MIMAG.host-associated.6.0 • MIMS.me.host-associated.6.0

Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated

All retrieved samples

• SAMN21241831: MIMAG Metagenome-assembled Genome sample from Endomicrobium sp.
• SAMN19322082: Termite gut metagenome of Incisitermes snyderi from Fort Lauderdale Research & Education Center, Florida, USA - Iy174

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Metadata retrieved 2 months ago