Genome sc|0001349


Database

NCBI Assembly

Accession

GCA_031275795.1

Genomics

Accession
NCBI Assembly:GCA_031275795.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.63%
  • Contamination: 0.0%
  • Quality: 96.63
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
97.0 ×
Source
Other features
  • G+C Content: 31.2%
  • Coding Density: 89.29%
  • Codon Table: 11
  • N50: 33,804 bp
  • Contigs: 49
  • Largest Contig: 104,582 bp
  • Assembly Length: 1,237,699 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2013-03-25
Location
Lat Lon: 26.0839646 N 80.2393931 W
Toponym
Geo Loc Name: USA: Fort Lauderdale Research & Education Center, Florida
Environment
Sample Type: metagenomic assembly
Isolation Source: termite gut
Env Broad Scale: terrestrial biome
Env Local Scale: woodland biome
Env Medium: tropical woodland biome
Other
Host: Incisitermes snyderi
Package
Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

Metagenome of Incisitermes snyderi : gut microbiota


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