Genome sc|0001350


Database

NCBI Assembly

Accession

GCA_031278895.1

Genomics

Accession
NCBI Assembly:GCA_031278895.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.63%
  • Contamination: 0.37%
  • Quality: 94.78
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 19 amino acids
Sequencing depth
97.0 ×
Source
Other features
  • G+C Content: 32.5%
  • Coding Density: 89.96%
  • Codon Table: 11
  • N50: 26,748 bp
  • Contigs: 66
  • Largest Contig: 99,723 bp
  • Assembly Length: 1,296,191 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified 4 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2017-07-19
Location
Lat Lon: 16.510183 N 61.465800 W
Toponym
Geo Loc Name: Guadeloupe: Pointe de la Grande Vigie, Guadeloupe, France • France: Pointe de la Grande Vigie, Guadeloupe, France
Environment
Sample Type: metagenomic assembly
Isolation Source: termite gut
Env Broad Scale: terrestrial biome
Env Local Scale: woodland biome
Env Medium: tropical woodland biome
Other
Host: Procryptotermes leewardensis
Package
Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated
All retrieved samples

Metadata retrieved 4 days ago

Sequencing Experiments

Metagenome of Procryptotermes leewardensis : gut microbiota


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license