Genome sc|0001350

Genomics

Accession

NCBI Assembly:GCA_031278895.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.63%
• Contamination: 0.37%
• Quality: 94.78

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 19 amino acids

Sequencing depth

97.0 ×

Source

• BioSample: SAMN21242385
• BioSample: SAMN19322096

Other features

• G+C Content: 32.5%
• Coding Density: 89.96%
• Codon Table: 11
• N50: 26,748 bp
• Contigs: 66
• Largest Contig: 99,723 bp
• Assembly Length: 1,296,191 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified 2 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN21242385
• BioSample: SAMN19322096

Date

Collection Date: 2017-07-19

Location

Lat Lon: 16.510183 N 61.465800 W

Toponym

Geo Loc Name: Guadeloupe: Pointe de la Grande Vigie, Guadeloupe, France • France: Pointe de la Grande Vigie, Guadeloupe, France

Environment

Sample Type: metagenomic assembly

Isolation Source: termite gut

Env Broad Scale: terrestrial biome

Env Local Scale: woodland biome

Env Medium: tropical woodland biome

Other

Host: Procryptotermes leewardensis

Package

Ncbi Submission Package: MIMAG.host-associated.6.0 • MIMS.me.host-associated.6.0

Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated

All retrieved samples

• SAMN21242385: MIMAG Metagenome-assembled Genome sample from Endomicrobium sp.
• SAMN19322096: Termite gut metagenome of Procryptotermes leewardensis from Pointe de la Grande Vigie, Guadeloupe, France, Guadeloupe - Pcl387

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Metadata retrieved 2 months ago