Genome sc|0001355


Database

NCBI Assembly

Accession

GCA_031282625.1

Genomics

Accession
NCBI Assembly:GCA_031282625.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.63%
  • Contamination: 0.0%
  • Quality: 96.63
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 8.0%)
  • tRNAs for 19 amino acids
Sequencing depth
97.0 ×
Source
Other features
  • G+C Content: 33.8%
  • Coding Density: 89.82%
  • Codon Table: 11
  • N50: 56,261 bp
  • Contigs: 40
  • Largest Contig: 110,867 bp
  • Assembly Length: 1,251,993 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2015-08-04
Location
Lat Lon: 1.468780 S 35.289799 E
Toponym
Geo Loc Name: Kenya: Talek
Environment
Sample Type: metagenomic assembly
Isolation Source: termite gut
Env Broad Scale: terrestrial biome
Env Local Scale: woodland biome
Env Medium: tropical woodland biome
Other
Host: Neotermes meruensis
Package
Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

Metagenome of Neotermes meruensis : gut microbiota


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license