Genome sc|0001356


Database

NCBI Assembly

Accession

GCA_031283745.1

Genomics

Accession
NCBI Assembly:GCA_031283745.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.13%
  • Contamination: 0.0%
  • Quality: 92.13
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 25.0%)
  • 0 23S rRNAs
  • tRNAs for 18 amino acids
Sequencing depth
92.0 ×
Source
Other features
  • G+C Content: 41.2%
  • Coding Density: 92.77%
  • Codon Table: 11
  • N50: 9,559 bp
  • Contigs: 159
  • Largest Contig: 42,170 bp
  • Assembly Length: 1,254,713 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified 4 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 1988-11-15
Location
Lat Lon: 21.905920 N 80.025672 W
Toponym
Geo Loc Name: Cuba: Parque Nacional Topes de Collantes, Sierra del Escambray
Environment
Sample Type: metagenomic assembly
Isolation Source: termite gut
Env Broad Scale: terrestrial biome
Env Local Scale: woodland biome
Env Medium: tropical woodland biome
Other
Host: Neotermes cubanus
Package
Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated
All retrieved samples

Metadata retrieved 4 days ago

Sequencing Experiments

Metagenome of Neotermes cubanus : gut microbiota


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license