JSON

Genome sc|0001406

Name

“Mesorhizobium nelspruitense”

Database

NCBI Assembly

Accession

GCA_025153915.1

Genomics

Accession
NCBI Assembly:GCA_025153915.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.92%
  • Contamination: 0.7%
  • Quality: 96.42
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
677.35 ×
Source
Other features
  • G+C Content: 63.27%
  • Coding Density: 86.54%
  • Codon Table: 11
  • N50: 474,172 bp
  • Contigs: 47
  • Largest Contig: 883,427 bp
  • Assembly Length: 6,212,690 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Most of the statistic were run using bbtools and QUAST. Specifically for the completeness and contamination was determined using CheckM. Finally the amino acid were determined by trnascan.
Automated checks
Complete

Sample Metadata

Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Not detected
All retrieved samples
Metadata retrieved 8 months ago


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