JSON

Genome sc|0001420

Name

Tantalella remotaTs

Database

NCBI Assembly

Accession

GCA_030765685.1

Genomics

Accession
NCBI Assembly:GCA_030765685.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.21%
  • Contamination: 1.79%
  • Quality: 89.26
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 8.0%)
  • 1 23S rRNA (up to 11.0%)
  • tRNAs for 20 amino acids
Sequencing depth
15.0 ×
Source
Other features
  • G+C Content: 47.35%
  • Coding Density: 88.68%
  • Codon Table: 11
  • N50: 35,614 bp
  • Contigs: 96
  • Largest Contig: 151,212 bp
  • Assembly Length: 2,025,415 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
IMG Annotation pipeline
CheckM1 from Williams et al 2021,  doi 10.3389/fmicb.2021.741077
CheckM2 from Seymour et al 2023,  doi 10.1038/s41564-022-01319-1  
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2006-12/2015-01
Location
Lat Lon: 68.4725 S 78.188 E
Toponym
Geo Loc Name: Antarctica: Ace Lake
Environment
Sample Type: metagenomic assembly
Isolation Source: saline lake water
Env Broad Scale: aquatic biome [ENVO:00002030]
Env Local Scale: saline lake [ENVO:0000002019]
Env Medium: saline water [ENVO:00002010]
Other
Not detected
Package
Ncbi Submission Package: MIMAG.6.0
Biosamplemodel: MIMAG
Additional Accessions
SAMN06267208, SAMN06267209, SAMN06267210, SAMN06267211, SAMN06267212, SAMN06267213, SAMN06267214, SAMN06267215, SAMN06267216, SAMN06267217, SAMN06267218, SAMN06267219, SAMN06267220, SAMN06267221, SAMN06267222, SAMN06343953, SAMN06343954, SAMN06343955, SAMN09200903, SAMN09200904, SAMN09200905, SAMN09200906, SAMN09200907, SAMN09200908, SAMN09200909, SAMN09200910, SAMN09200911, SAMN09200912, SAMN09200914, SAMN09200915, SAMN09200916, SAMN09200917, SAMN09200918, SAMN09200919, SAMN09200920, SAMN09200921, SAMN09200922, SAMN09200923, SAMN09200924, SAMN09200925, SAMN09200939, SAMN09200940, SAMN09200941, SAMN09200942, SAMN09200943, SAMN09200944, SAMN09200945, SAMN09200946, SAMN09200947, SAMN09200948, SAMN09200949, SAMN09200962, SAMN09201091, SAMN09201092, SAMN09201093, SAMN09201094, SAMN09201095, SAMN09201096, SAMN09201097, SAMN09201098, SAMN09201099, SAMN09201100, SAMN09201101, SAMN09201102, SAMN09201103, SAMN09201406, SAMN09201407, SAMN09201408, SAMN09201409, SAMN09201412, SAMN09202328, SAMN09202352, SAMN09202353, SAMN09202354, SAMN09202355, SAMN09202356, SAMN09202357, SAMN09202358, SAMN09202359, SAMN09202360, SAMN09202361, SAMN09202384, SAMN09202385, SAMN09202386, SAMN09202387, SAMN09202388, SAMN09202389, SAMN09202390, SAMN09202391, SAMN09202392, SAMN09202393, SAMN09202415, SAMN09202416, SAMN09202417, SAMN09202418, SAMN09202419, SAMN09202420, SAMN09202421, SAMN09202422, SAMN09202423
All retrieved samples
Metadata retrieved about 1 month ago


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