Genome sc|0001430


Database

NCBI Assembly

Accession

GCA_031261915.1

Genomics

Accession
NCBI Assembly:GCA_031261915.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.34%
  • Contamination: 1.6%
  • Quality: 86.34
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Sequencing depth
94.0 ×
Source
Other features
  • G+C Content: 24.01%
  • Coding Density: 78.21%
  • Codon Table: 11
  • N50: 13,866 bp
  • Contigs: 316
  • Largest Contig: 62,273 bp
  • Assembly Length: 3,071,152 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified 10 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-11-17
Location
Lat Lon: 25.753482 S 28.237741 E
Toponym
Geo Loc Name: South Africa: Pretoria
Environment
Sample Type: metagenomic assembly
Isolation Source: termite gut
Env Broad Scale: terrestrial biome
Env Local Scale: woodland biome
Env Medium: tropical woodland biome
Other
Host: Hodotermes mossambicus
Package
Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated
All retrieved samples

Metadata retrieved 10 days ago

Sequencing Experiments

Metagenome of Hodotermes mossambicus : gut microbiota


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license