Genome sc|0001431

Genomics

Accession

NCBI Assembly:GCA_031282205.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.8%
• Contamination: 0.8%
• Quality: 92.8

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

97.0 ×

Source

• BioSample: SAMN21242246
• BioSample: SAMN19322092

Other features

• G+C Content: 29.35%
• Coding Density: 70.72%
• Codon Table: 11
• N50: 11,100 bp
• Contigs: 215
• Largest Contig: 48,130 bp
• Assembly Length: 1,988,740 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

Sample Metadata

BioSample entries

• BioSample: SAMN21242246
• BioSample: SAMN19322092

Date

Collection Date: 2015-08-04

Location

Lat Lon: 1.468780 S 35.289799 E

Toponym

Geo Loc Name: Kenya: Talek

Environment

Sample Type: metagenomic assembly

Isolation Source: termite gut

Env Broad Scale: terrestrial biome

Env Local Scale: woodland biome

Env Medium: tropical woodland biome

Other

Host: Neotermes meruensis

Package

Ncbi Submission Package: MIMAG.host-associated.6.0 • MIMS.me.host-associated.6.0

Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated

All retrieved samples

• SAMN21242246: MIMAG Metagenome-assembled Genome sample from Candidatus Methanovirga aequatorialis
• SAMN19322092: Termite gut metagenome of Neotermes meruensis from Talek, Kenya - Nm470

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Metadata retrieved 1 day ago