Genome sc|0001433


Database

NCBI Assembly

Accession

GCA_031284445.1

Genomics

Accession
NCBI Assembly:GCA_031284445.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.4%
  • Contamination: 0.44%
  • Quality: 92.2
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
94.0 ×
Source
Other features
  • G+C Content: 27.88%
  • Coding Density: 67.77%
  • Codon Table: 11
  • N50: 8,632 bp
  • Contigs: 282
  • Largest Contig: 45,044 bp
  • Assembly Length: 2,064,200 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified 8 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 1988-11-15
Location
Lat Lon: 21.905920 N 80.025672 W
Toponym
Geo Loc Name: Cuba: Parque Nacional Topes de Collantes, Sierra del Escambray
Environment
Sample Type: metagenomic assembly
Isolation Source: termite gut
Env Broad Scale: terrestrial biome
Env Local Scale: woodland biome
Env Medium: tropical woodland biome
Other
Host: Neotermes cubanus
Package
Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated
All retrieved samples

Metadata retrieved 8 days ago

Sequencing Experiments

Metagenome of Neotermes cubanus : gut microbiota


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