Genome sc|0001433

Genomics

Accession

NCBI Assembly:GCA_031284445.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.4%
• Contamination: 0.44%
• Quality: 92.2

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

94.0 ×

Source

• BioSample: SAMN21242134
• BioSample: SAMN19322089

Other features

• G+C Content: 27.88%
• Coding Density: 67.77%
• Codon Table: 11
• N50: 8,632 bp
• Contigs: 282
• Largest Contig: 45,044 bp
• Assembly Length: 2,064,200 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

Sample Metadata

BioSample entries

• BioSample: SAMN21242134
• BioSample: SAMN19322089

Date

Collection Date: 1988-11-15

Location

Lat Lon: 21.905920 N 80.025672 W

Toponym

Geo Loc Name: Cuba: Parque Nacional Topes de Collantes, Sierra del Escambray

Environment

Sample Type: metagenomic assembly

Isolation Source: termite gut

Env Broad Scale: terrestrial biome

Env Local Scale: woodland biome

Env Medium: tropical woodland biome

Other

Host: Neotermes cubanus

Package

Ncbi Submission Package: MIMAG.host-associated.6.0 • MIMS.me.host-associated.6.0

Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated

All retrieved samples

• SAMN21242134: MIMAG Metagenome-assembled Genome sample from Candidatus Methanovirga basalitermitum
• SAMN19322089: Termite gut metagenome of Neotermes cubanus from Parque Nacional Topes de Collantes, Sierra del Escambray, Cuba - Ncb351

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Metadata retrieved 1 day ago