Genome sc|0001434


Database

NCBI Assembly

Accession

GCA_031289325.1

Genomics

Accession
NCBI Assembly:GCA_031289325.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.4%
  • Contamination: 0.0%
  • Quality: 98.4
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 19 amino acids
Sequencing depth
98.0 ×
Source
Other features
  • G+C Content: 23.77%
  • Coding Density: 66.82%
  • Codon Table: 11
  • N50: 11,129 bp
  • Contigs: 275
  • Largest Contig: 30,438 bp
  • Assembly Length: 2,361,339 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified about 2 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-08-28
Location
Lat Lon: 35.225246 S 71.369964 W
Toponym
Geo Loc Name: Chile: Region del Maule, Estero Los Robles
Environment
Sample Type: metagenomic assembly
Isolation Source: termite gut
Env Broad Scale: terrestrial biome
Env Local Scale: woodland biome
Env Medium: tropical woodland biome
Other
Host: Porotermes quadricollis
Package
Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated
All retrieved samples

Metadata retrieved about 2 months ago

Sequencing Experiments

Metagenome of Porotermes quadricollis : gut microbiota


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