Genome sc|0001434

Genomics

Accession

NCBI Assembly:GCA_031289325.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 98.4%
• Contamination: 0.0%
• Quality: 98.4

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 19 amino acids

Sequencing depth

98.0 ×

Source

• BioSample: SAMN21242546
• BioSample: SAMN19322100

Other features

• G+C Content: 23.77%
• Coding Density: 66.82%
• Codon Table: 11
• N50: 11,129 bp
• Contigs: 275
• Largest Contig: 30,438 bp
• Assembly Length: 2,361,339 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

Sample Metadata

BioSample entries

• BioSample: SAMN21242546
• BioSample: SAMN19322100

Date

Collection Date: 2018-08-28

Location

Lat Lon: 35.225246 S 71.369964 W

Toponym

Geo Loc Name: Chile: Region del Maule, Estero Los Robles

Environment

Sample Type: metagenomic assembly

Isolation Source: termite gut

Env Broad Scale: terrestrial biome

Env Local Scale: woodland biome

Env Medium: tropical woodland biome

Other

Host: Porotermes quadricollis

Package

Ncbi Submission Package: MIMAG.host-associated.6.0 • MIMS.me.host-associated.6.0

Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated

All retrieved samples

• SAMN21242546: MIMAG Metagenome-assembled Genome sample from Candidatus Methanovirga meridionalis
• SAMN19322100: Termite gut metagenome of Porotermes quadricollis from Región del Maule, Estero Los Robles, Chile - Pq454

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Metadata retrieved 1 day ago