Genome sc|0001440

Genomics

Accession

NCBI Assembly:GCA_031286225.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 97.6%
• Contamination: 0.0%
• Quality: 97.6

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

98.0 ×

Source

• BioSample: SAMN21242674
• BioSample: SAMN19322104

Other features

• G+C Content: 25.85%
• Coding Density: 73.02%
• Codon Table: 11
• N50: 54,123 bp
• Contigs: 55
• Largest Contig: 121,317 bp
• Assembly Length: 1,914,402 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

Sample Metadata

BioSample entries

• BioSample: SAMN21242674
• BioSample: SAMN19322104

Date

Collection Date: 2017-03-22

Location

Lat Lon: 5.071383 N 53.039049 W

Toponym

Geo Loc Name: French Guiana: Petit Saut

Environment

Sample Type: metagenomic assembly

Isolation Source: termite gut

Env Broad Scale: terrestrial biome

Env Local Scale: woodland biome

Env Medium: tropical woodland biome

Other

Host: Spinitermes trispinosus

Package

Ncbi Submission Package: MIMAG.host-associated.6.0 • MIMS.me.host-associated.6.0

Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated

All retrieved samples

• SAMN21242674: MIMAG Metagenome-assembled Genome sample from Candidatus Methanorudis spinitermitis
• SAMN19322104: Termite gut metagenome of Spinitermes trispinosus from Petit Saut, French Guiana, France - Spi319

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Metadata retrieved 1 day ago