Keywords: GSC:MIxS;MIMAG:6.0

BioSample Accession(s)

SAMN21242674, ERS16667260

collection_date

2017-03-22

type-material

reference material of Candidatus Methanorudis spinitermitis

organism

Candidatus Methanorudis spinitermitis

isolation-source

termite gut

env_broad_scale

terrestrial biome

metagenomic

1

derived-from

This BioSample is a metagenomic assembly obtained from the termite gut metagenome BioSample: SAMN19322104

sample_type

metagenomic assembly

environmental-sample

1

env_local_scale

woodland biome

metagenome-source

termite gut metagenome

isolate

Spi319_bin4

NCBI submission package

MIMAG.host-associated.6.0

host

Spinitermes trispinosus

geo_loc_name

French Guiana: Petit Saut

host_body_habitat

gut

env_medium

tropical woodland biome

lat_lon

5.071383 N 53.039049 W

sample-type

metagenomic assembly

BioSampleModel

MIMAG.host-associated

ENA-FIRST-PUBLIC

2023-08-17

ENA-LAST-UPDATE

2024-05-19

Keywords: GSC:MIxS;MIMS:6.0

BioSample Accession(s)

SAMN19322104, SRS9116954

collection_date

2017-03-22

INSDC secondary accession

SRS9116954

organism

termite gut metagenome

isolation-source

termite gut

env_broad_scale

terrestrial biome

env_local_scale

woodland biome

isolate

Spi319

NCBI submission package

MIMS.me.host-associated.6.0

host

Spinitermes trispinosus

geo_loc_name

French Guiana: Petit Saut

host_body_habitat

gut

env_medium

tropical woodland biome

lat_lon

5.071383 N 53.039049 W

BioSampleModel

MIGS/MIMS/MIMARKS.host-associated

ENA-FIRST-PUBLIC

2023-08-17

ENA-LAST-UPDATE

2023-08-17

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX11048920" alias="Spi319_metagenome" center_name="SUB9672559" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX11048920</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB9672559">Spi319_metagenome</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Metagenome of Spinitermes trispinosus : gut microbiota</TITLE>
  <STUDY_REF accession="SRP322319">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP322319</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB9672559">bp0</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Processing of the termite samples and DNA extraction and purification were described in Rossmassler et al., 2015, Microbiome. Metagenomic libraries were sequenced by Eurofins, Germany.</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS9116954">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS9116954</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|vincent.herve8">Spi319</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Spi319_metagenome</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS9116954</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1236471</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX11048920&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX11048920&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>