SeqCode Registry
cognitis nomina
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Genomes
sc|0001442
JSON
Genome sc|0001442
Name
“Parasynechococcus marisnigri”
Database
NCBI Assembly
Accession
GCF_000195975.1
Genomics
Accession
NCBI Assembly:
GCF_000195975.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
99.36%
Contamination:
0.0%
Quality:
99.36
Ribosomal and transfer RNA genes
2 16S rRNAs (up to 100.0%)
2 23S rRNAs (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
16.0 ×
Source
BioSample: SAMEA3138327
BioSample: SAMN02744046
Other features
G+C Content:
59.5%
Coding Density:
90.35%
Codon Table:
11
N50:
2,434,428 bp
Contigs:
1
Largest Contig:
2,434,428 bp
Assembly Length:
2,434,428 bp
Ambiguous Assembly Fraction:
0.0%
Submitter comments
CheckM analysis was used for completeness and contamination estimates
Automated checks
Complete
Sample Metadata
Date
Collection Date:
not collected
Location
Lat Lon:
not collected
Toponym
Geo Loc Name:
Atlantic Ocean: tropical in 1981
Environment
Not detected
Other
Not detected
Package
Ena Checklist:
ERC000011
Ncbi Submission Package:
MIGS.ba.5.0
Biosamplemodel:
MIGS.ba
All retrieved samples
SAMEA3138327
: BioSample entry for genome collection GCA_000195975
SAMN02744046
: Prochlorococcus sp. WH8102
Metadata retrieved
3 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMEA3138327
×
strain
WH 8102
ENA-CHECKLIST
ERC000011
ENA-FIRST-PUBLIC
2014-11-20
organism
Synechococcus sp. WH 8102
ENA-LAST-UPDATE
2014-11-20
scientific_name
Synechococcus sp. WH 8102
SAMN02744046
×
Keywords: GSC:MIxS;MIGS:5.0
strain
WH 8102
collection_date
not collected
isol_growth_condt
missing
ref_biomaterial
missing
type-material
reference strain of Parasynechococcus marenigrum
organism
Parasynechococcus marenigrum WH 8102
project_name
Synechococcus sp. WH 8102
NCBI submission package
MIGS.ba.5.0
feature
missing
material
missing
biome
missing
num_replicons
missing
geo_loc_name
Atlantic Ocean: tropical in 1981
investigation_type
bacteria_archaea
env_package
missing
lat_lon
not collected
BioSampleModel
MIGS.ba
ENA-FIRST-PUBLIC
2014-05-05
ENA-LAST-UPDATE
2021-10-17
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