strain

DIV2402

collection_date

2014

host_disease

not applicable

INSDC secondary accession

SRS19430780

NCBI submission package

Pathogen.cl.1.0

organism

Enterococcus sp. DIV2402

host

cockatoo

geo_loc_name

Germany

isolate_name_alias

not applicable

collected_by

Gilmore lab - Harvard Med School

lat_lon

not collected

isolation_source

feces

BioSampleModel

Pathogen.cl

ENA-FIRST-PUBLIC

2018-06-12

ENA-LAST-UPDATE

2023-11-06

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX22384549" alias="DIV2402" center_name="SUB13956108" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX22384549</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB13956108">DIV2402</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>long-read sequence of novel enterococcal species</TITLE>
  <STUDY_REF accession="SRP108140">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP108140</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA313452</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Pacbio sequencing</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS19430780">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS19430780</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN09399637</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>DIV2402</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <PACBIO_SMRT>
      <INSTRUMENT_MODEL>Sequel</INSTRUMENT_MODEL>
    </PACBIO_SMRT>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS19430780</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1746198</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX22384549&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX22384549&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>