SeqCode Registry
cognitis nomina
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Genomes
sc|0001460
JSON
Genome sc|0001460
Name
Enterococcus dunnyi
Database
NCBI Assembly
Accession
GCA_002174455.1
Genomics
Accession
NCBI Assembly:
GCA_002174455.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
100.0%
Contamination:
4.7%
Quality:
76.5
Ribosomal and transfer RNA genes
3 16S rRNAs (up to 100.0%)
4 23S rRNAs (up to 100.0%)
tRNAs for 17 amino acids
Sequencing depth
93.0 ×
Source
BioSample: SAMN04634088
Other features
G+C Content:
36.12%
Coding Density:
87.27%
Codon Table:
11
N50:
1,274,976 bp
Contigs:
7
Largest Contig:
1,435,713 bp
Assembly Length:
3,615,898 bp
Ambiguous Assembly Fraction:
4.25%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2015
Location
Not detected
Toponym
Geo Loc Name:
USA: Arizona
Environment
Isolation Source:
intestinal contents
Other
Host:
Insect
Package
Ncbi Submission Package:
Pathogen.cl.1.0
Biosamplemodel:
Pathogen.cl
All retrieved samples
SAMN04634088
: Enterococcus sp. 9D6_DIV0238
Metadata retrieved
9 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN04634088
×
strain
9D6_DIV0238
INSDC secondary accession
SRS2253661
NCBI submission package
Pathogen.cl.1.0
organism
Enterococcus sp. 9D6_DIV0238
collection date
2015
isolation source
intestinal contents
geo loc name
USA: Arizona
host
Insect
BioSampleModel
Pathogen.cl
ENA-FIRST-PUBLIC
2016-04-14
ENA-LAST-UPDATE
2017-06-06
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