SeqCode Registry
cognitis nomina
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Genomes
sc|0001461
JSON
Genome sc|0001461
Name
Enterococcus ferrettii
Database
NCBI Assembly
Accession
GCA_017377655.1
Genomics
Accession
NCBI Assembly:
GCA_017377655.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
98.1%
Contamination:
7.5%
Quality:
60.6
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 19 amino acids
Sequencing depth
100.0 ×
Source
BioSample: SAMN18075561
Other features
G+C Content:
39.21%
Coding Density:
87.08%
Codon Table:
11
N50:
76,278 bp
Contigs:
157
Largest Contig:
293,765 bp
Assembly Length:
5,396,889 bp
Ambiguous Assembly Fraction:
0.013%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2014-12
Location
Not detected
Toponym
Geo Loc Name:
USA:Massachusetts
Environment
Sample Type:
isolate
Isolation Source:
cloacal & blood material from turtle
Other
Host:
Kemp's ridley turtle
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SAMN18075561
: Ente_pall_665A_V4
Metadata retrieved
10 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN18075561
×
strain
665A
INSDC secondary accession
SRS19430779
NCBI submission package
Microbe.1.0
organism
Enterococcus sp. 665A
collection date
2014-12
isolation source
cloacal & blood material from turtle
geo loc name
USA:Massachusetts
host
Kemp's ridley turtle
isolate_name_alias
665A_V4
sample type
isolate
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2021-02-26
ENA-LAST-UPDATE
2023-11-06
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