Genome sc|0000147


Database

NCBI Assembly

Accession

GCA_012270965.1

Genomics

Accession
NCBI Assembly:GCA_012270965.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.11%
  • Contamination: 3.3%
  • Quality: 73.61
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 73.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 68.94%
  • Coding Density: 90.15%
  • Codon Table: 11
  • N50: 80,204 bp
  • Contigs: 99
  • Largest Contig: 240,648 bp
  • Assembly Length: 3,562,629 bp
  • Ambiguous Assembly Fraction: 0.02%
Submitter comments
Genome quality has been evaluated with checkM, presence of 16S rRNA gene was checked with sortmerna and tRNA were identified using tRNAscan
Automated checks
Complete

Last modified 29 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2013-10-25
Location
Lat Lon: 18.5446 S 146.4881 E
Toponym
Geo Loc Name: Australia: Orpheus Island
Environment
Env Broad Scale: coral reef
Env Local Scale: Tropical coral biome
Env Medium: Tissue
Other
Host: Porites lutea
Package
Ncbi Submission Package: MIMS.me.host-associated.5.0
Biosamplemodel: MIGS/MIMS/MIMARKS.host-associated
All retrieved samples

Metadata retrieved 29 days ago

Sequencing Experiments

Porites lutea, replicate 1, soil extraction
Porites lutea, replicate 2, soil extraction
Porites lutea, replicate 3, soil extraction
Porites lutea, replicate 1, phenol extraction
Porites lutea, replicate 3, phenol extraction, shallow sequencing
Porites lutea, replicate 3, phenol extraction, deep sequencing 1, chunk 4
Porites lutea, replicate 3, phenol extraction, deep sequencing 1, chunk 3
Porites lutea, replicate 3, phenol extraction, deep sequencing 1, chunk 2
Porites lutea, replicate 3, phenol extraction, deep sequencing 1, chunk 1
Porites lutea, replicate 3, phenol extraction, deep sequencing 2, chunk 4
Porites lutea, replicate 3, phenol extraction, deep sequencing 2, chunk 3
Porites lutea, replicate 3, phenol extraction, deep sequencing 2, chunk 2
Porites lutea, replicate 3, phenol extraction, deep sequencing 2, chunk 1
Porites lutea, replicate 1, plant extraction
Porites lutea, replicate 3, plant extraction
Porites lutea, replicate 1, ultraclean extraction
Porites lutea, replicate 3, ultraclean extraction
Porites lutea sequenced prior to microbial enrichment


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