Genome sc|0000147


Database

NCBI Assembly

Accession

GCA_012270965.1

Genomics

Accession
NCBI Assembly:GCA_012270965.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.11%
  • Contamination: 3.3%
  • Quality: 73.61
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 73.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 68.94%
  • Coding Density: 90.15%
  • Codon Table: 11
  • N50: 80,204 bp
  • Contigs: 99
  • Largest Contig: 240,648 bp
  • Assembly Length: 3,562,629 bp
  • Ambiguous Assembly Fraction: 0.02%
Submitter comments
Genome quality has been evaluated with checkM, presence of 16S rRNA gene was checked with sortmerna and tRNA were identified using tRNAscan
Automated checks
Complete

Last modified over 1 year ago

Sample Metadata

BioSample entries
Date
Collection Date: 2013-10-25
Location
Lat Lon: 18° 32′ 41″ S, 146° 29′ 17″ E
View map of sampling locations
Toponym
Geo Loc Name: Australia: Orpheus Island
Environment
Env Broad Scale: coral reef
Env Local Scale: Tropical coral biome
Env Medium: Tissue
Other
Host: Porites lutea
Package
Ncbi Submission Package: MIMS.me.host-associated.5.0
Biosamplemodel: MIGS/MIMS/MIMARKS.host-associated
All retrieved samples

Metadata retrieved over 1 year ago

Sequencing Experiments

Porites lutea, replicate 3, phenol extraction, deep sequencing 1, chunk 4
Porites lutea, replicate 3, phenol extraction, deep sequencing 1, chunk 3
Porites lutea, replicate 3, phenol extraction, deep sequencing 1, chunk 2
Porites lutea, replicate 3, phenol extraction, deep sequencing 1, chunk 1
Porites lutea, replicate 3, phenol extraction, deep sequencing 2, chunk 4
Porites lutea, replicate 3, phenol extraction, deep sequencing 2, chunk 3
Porites lutea, replicate 3, phenol extraction, deep sequencing 2, chunk 2
Porites lutea, replicate 3, phenol extraction, deep sequencing 2, chunk 1


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