SeqCode Registry
cognitis nomina
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Genomes
sc|0001474
JSON
Genome sc|0001474
Name
Electrothrix communis
Ts
Database
NCBI Assembly
Accession
GCA_030644725.1
Genomics
Accession
NCBI Assembly:
GCA_030644725.1
Type
Enrichment Genome
Estimated Quality Metrics
Completeness:
95.88%
Contamination:
1.14%
Quality:
90.18
Ribosomal and transfer RNA genes
2 16S rRNAs (up to 100.0%)
2 23S rRNAs (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
166.0 ×
Source
BioSample: SAMN35797024
Other features
G+C Content:
48.36%
Coding Density:
86.33%
Codon Table:
11
N50:
4,845,585 bp
Contigs:
1
Largest Contig:
4,845,585 bp
Assembly Length:
4,845,585 bp
Ambiguous Assembly Fraction:
0.0%
Submitter comments
This is a circular genome after hybrid assembly of Illumina and Nanopore reads; still completeness (by CheckM2) was only estimated to 95.88%.
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2020
Location
Lat Lon:
56.1385 N 10.2157 E
Toponym
Geo Loc Name:
Denmark: Marselisborg harbour
Environment
Sample Type:
metagenomic assembly
Isolation Source:
marine sediment
Env Broad Scale:
ENVO:03000034
Env Local Scale:
ENVO:00000464
Env Medium:
ENVO:00005795
Other
Not detected
Package
Ncbi Submission Package:
MIMAG.6.0
Biosamplemodel:
MIMAG
All retrieved samples
SAMN35797024
: MIMAG Metagenome-assembled Genome sample from Candidatus Electrothrix communis
Metadata retrieved
9 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN35797024
×
Keywords: GSC:MIxS;MIMAG:6.0
collection_date
2020
organism
Candidatus Electrothrix communis
env_broad_scale
ENVO:03000034
metagenomic
TRUE
sample_type
metagenomic assembly
environmental-sample
TRUE
env_local_scale
ENVO:00000464
metagenome-source
marine sediment metagenome
isolate
RB
NCBI submission package
MIMAG.6.0
geo_loc_name
Denmark: Marselisborg harbour
env_medium
ENVO:00005795
lat_lon
56.1385 N 10.2157 E
isolation_source
marine sediment
BioSampleModel
MIMAG
ENA-FIRST-PUBLIC
2023-08-05
ENA-LAST-UPDATE
2023-08-05
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