SeqCode Registry
cognitis nomina
About
Search
•
Login
Register
Genomes
sc|0001475
JSON
Genome sc|0001475
Name
Electrothrix aestuarii
Database
NCBI Assembly
Accession
GCA_032595685.1
Genomics
Accession
NCBI Assembly:
GCA_032595685.1
Type
Enrichment Genome
Estimated Quality Metrics
Completeness:
91.49%
Contamination:
2.05%
Quality:
81.24
Ribosomal and transfer RNA genes
2 16S rRNAs (up to 100.0%)
2 23S rRNAs (up to 100.0%)
tRNAs for 19 amino acids
Sequencing depth
55.0 ×
Source
BioSample: SAMN36504009
Other features
G+C Content:
48.03%
Coding Density:
86.43%
Codon Table:
11
N50:
776,319 bp
Contigs:
9
Largest Contig:
1,057,715 bp
Assembly Length:
4,900,016 bp
Ambiguous Assembly Fraction:
0.0%
Submitter comments
Hybrid assembly of Illumina and Nanopore reads, quality assessment with CheckM2
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2022
Location
Lat Lon:
51.439 N 4.167 E
Toponym
Geo Loc Name:
Netherlands: Rattekaai salt marsh
Environment
Sample Type:
metagenomic assembly
Isolation Source:
enrichment culture inoculated with sediment from salt marsh
Env Broad Scale:
ENVO:03000034
Env Local Scale:
ENVO:00000045
Env Medium:
ENVO:00005795
Other
Depth:
0-15 cm
Package
Ncbi Submission Package:
MIMAG.sediment.6.0
Biosamplemodel:
MIMAG.sediment
All retrieved samples
SAMN36504009
: MIMAG Metagenome-assembled Genome sample from Candidatus Electrothrix sp. Rat1
Metadata retrieved
9 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN36504009
×
Keywords: GSC:MIxS;MIMAG:6.0
collection_date
2022
organism
Candidatus Electrothrix sp. Rat1
env_broad_scale
ENVO:03000034
metagenomic
1
environmental-sample
1
env_local_scale
ENVO:00000045
metagenome-source
salt marsh metagenome
isolate
Rat1
NCBI submission package
MIMAG.sediment.6.0
depth
0-15 cm
elev
0
geo_loc_name
Netherlands: Rattekaai salt marsh
env_medium
ENVO:00005795
lat_lon
51.439 N 4.167 E
isolation_source
enrichment culture inoculated with sediment from salt marsh
sample-type
metagenomic assembly
BioSampleModel
MIMAG.sediment
ENA-FIRST-PUBLIC
2023-10-13
ENA-LAST-UPDATE
2023-10-13
Search
×
Names
Publications
Authors
Subjects