Genome sc|0001475

Genomics

Accession

NCBI Assembly:GCA_032595685.1

Type

Enrichment Genome

Estimated Quality Metrics

• Completeness: 91.49%
• Contamination: 2.05%
• Quality: 81.24

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 2 23S rRNAs (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

55.0 ×

Source

• BioSample: SAMN36504009

Other features

• G+C Content: 48.03%
• Coding Density: 86.43%
• Codon Table: 11
• N50: 776,319 bp
• Contigs: 9
• Largest Contig: 1,057,715 bp
• Assembly Length: 4,900,016 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Hybrid assembly of Illumina and Nanopore reads, quality assessment with CheckM2

Automated checks

Complete

Sample Metadata

BioSample entries

• BioSample: SAMN36504009

Date

Collection Date: 2022

Location

Lat Lon: 51.439 N 4.167 E

Toponym

Geo Loc Name: Netherlands: Rattekaai salt marsh

Environment

Sample Type: metagenomic assembly

Isolation Source: enrichment culture inoculated with sediment from salt marsh

Env Broad Scale: ENVO:03000034

Env Local Scale: ENVO:00000045

Env Medium: ENVO:00005795

Other

Depth: 0-15 cm

Package

Ncbi Submission Package: MIMAG.sediment.6.0

Biosamplemodel: MIMAG.sediment

Additional Accessions

SAMN36436025

All retrieved samples

• SAMN36504009: MIMAG Metagenome-assembled Genome sample from Candidatus Electrothrix sp. Rat1

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Metadata retrieved 1 day ago