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cognitis nomina
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Genomes
sc|0001476
JSON
Genome sc|0001476
Name
Electrothrix rattekaaiensis
Database
NCBI Assembly
Accession
GCA_032595675.1
Genomics
Accession
NCBI Assembly:
GCA_032595675.1
Type
Enrichment Genome
Estimated Quality Metrics
Completeness:
96.19%
Contamination:
0.72%
Quality:
92.59
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
57.0 ×
Source
BioSample: SAMN36504010
Other features
G+C Content:
48.35%
Coding Density:
87.17%
Codon Table:
11
N50:
2,691,434 bp
Contigs:
5
Largest Contig:
2,691,434 bp
Assembly Length:
4,477,327 bp
Ambiguous Assembly Fraction:
0.0%
Submitter comments
Hybrid assembly of Illumina and Nanopore reads, quality check by CheckM2
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2022
Location
Lat Lon:
51.439 N 4.167 E
Toponym
Geo Loc Name:
Netherlands: Rattekaai salt marsh
Environment
Sample Type:
metagenomic assembly
Isolation Source:
enrichment culture inoculated with sediment from salt marsh
Env Broad Scale:
ENVO:03000034
Env Local Scale:
ENVO:00000045
Env Medium:
ENVO:00005795
Other
Depth:
0-15 cm
Package
Ncbi Submission Package:
MIMAG.sediment.6.0
Biosamplemodel:
MIMAG.sediment
All retrieved samples
SAMN36504010
: MIMAG Metagenome-assembled Genome sample from Candidatus Electrothrix sp. Rat3
Metadata retrieved
10 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN36504010
×
Keywords: GSC:MIxS;MIMAG:6.0
collection_date
2022
organism
Candidatus Electrothrix sp. Rat3
env_broad_scale
ENVO:03000034
metagenomic
1
environmental-sample
1
env_local_scale
ENVO:00000045
metagenome-source
salt marsh metagenome
isolate
Rat3
NCBI submission package
MIMAG.sediment.6.0
depth
0-15 cm
elev
0
geo_loc_name
Netherlands: Rattekaai salt marsh
env_medium
ENVO:00005795
lat_lon
51.439 N 4.167 E
isolation_source
enrichment culture inoculated with sediment from salt marsh
sample-type
metagenomic assembly
BioSampleModel
MIMAG.sediment
ENA-FIRST-PUBLIC
2023-10-13
ENA-LAST-UPDATE
2023-10-13
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