Genome sc|0000148


Database

NCBI Assembly

Accession

GCA_023554445.1

Genomics

Accession
NCBI Assembly:GCA_023554445.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.7%
  • Contamination: 4.4%
  • Quality: 74.7
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 56.0%)
  • 0 23S rRNAs
  • tRNAs for 18 amino acids
Source
Other features
  • G+C Content: 65.49%
  • Coding Density: 93.26%
  • Codon Table: 11
  • N50: 28,327 bp
  • Contigs: 153
  • Largest Contig: 129,720 bp
  • Assembly Length: 2,826,554 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome quality has been evaluated with checkM, presence of 16S rRNA gene was checked with sortmerna and tRNA were identified using tRNAscan
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-09-02
Location
Lat Lon: 37.75 N 0.78 W
Toponym
Geo Loc Name: Spain: Mar Menor (Region de Murcia)
Environment
Isolation Source: marine sediment
Env Broad Scale: marine sediment
Env Local Scale: coastal lagoon
Env Medium: Mud
Other
Depth: 0-4.5 cm
Package
Ncbi Submission Package: MIMS.me.sediment.5.0
Biosamplemodel: MIGS/MIMS/MIMARKS.sediment
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

S162_station


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