Genome sc|0000148

Genomics

Accession

NCBI Assembly:GCA_023554445.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.7%
• Contamination: 4.4%
• Quality: 74.7

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 56.0%)
• 0 23S rRNAs
• tRNAs for 18 amino acids

Source

• BioSample: SAMN28544686
• BioSample: SAMN28544686

Other features

• G+C Content: 65.49%
• Coding Density: 93.26%
• Codon Table: 11
• N50: 28,327 bp
• Contigs: 153
• Largest Contig: 129,720 bp
• Assembly Length: 2,826,554 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Genome quality has been evaluated with checkM, presence of 16S rRNA gene was checked with sortmerna and tRNA were identified using tRNAscan

Automated checks

Complete

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Last modified 6 days ago

Sample Metadata

BioSample entries

• BioSample: SAMN28544686
• BioSample: SAMN28544686

Date

Collection Date: 2018-09-02

Location

Lat Lon: 37.75 N 0.78 W

Toponym

Geo Loc Name: Spain: Mar Menor (Region de Murcia)

Environment

Isolation Source: marine sediment

Env Broad Scale: marine sediment

Env Local Scale: coastal lagoon

Env Medium: Mud

Other

Depth: 0-4.5 cm

Package

Ncbi Submission Package: MIMS.me.sediment.5.0

Biosamplemodel: MIGS/MIMS/MIMARKS.sediment

All retrieved samples

• SAMN28544686: MIMS Environmental/Metagenome sample from marine sediment metagenome

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Metadata retrieved 6 days ago