Genome sc|0001482


Database

NCBI Assembly

Accession

GCA_033865115.1

Genomics

Accession
NCBI Assembly:GCA_033865115.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.5%
  • Contamination: 0.0%
  • Quality: 90.5
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 2 23S rRNAs (up to 74.0%)
  • tRNAs for 19 amino acids
Sequencing depth
33.0 ×
Source
Other features
  • G+C Content: 52.96%
  • Coding Density: 95.73%
  • Codon Table: 11
  • N50: 8,774 bp
  • Contigs: 239
  • Largest Contig: 46,186 bp
  • Assembly Length: 1,516,212 bp
  • Ambiguous Assembly Fraction: 0.14%
Automated checks
Complete

Last modified 9 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2016-01-27
Location
Lat Lon: 33.991019 S 151.232503 E
Toponym
Geo Loc Name: Australia: NSW, Sydney, Bare Island
Environment
Sample Type: metagenomic assembly
Isolation Source: bacterial pellet from adult marine sponge
Env Broad Scale: marine biome [ENVO:00000447]|marine benthic biome[ENVO:01000024]|marine subtidal rocky reef biome[ENVO:01000050]
Env Local Scale: coastal sea water[ENVO:00002150]
Env Medium: coastal sea water[ENVO:00002150]
Other
Host: Crella incrustans levis
Package
Biosamplemodel: MIMAG.symbiont-associated • Metagenome or environmental
All retrieved samples

Metadata retrieved 9 days ago

Sequencing Experiments

Illumina shot-gun sequencing of bacterial pellet from marine sponge Crella incrustans


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license