JSON

Genome sc|0001490

Name

Not registered

Database

NCBI Assembly

Accession

GCA_005788175.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_005788175.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 78.07% (automated estimate: 84.9%)
  • Contamination: 1.32% (automated estimate: 0.9%)
  • Quality: 71.47 (automated estimate: 80.4)
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 15 amino acids
Sequencing depth
10.0 ×
Source
Other features
  • G+C Content: 43.5% (automated estimate: 43.46%)
  • Coding Density: 94.55%
  • Codon Table: 11
  • N50: 233,378 bp
  • Contigs: 16
  • Largest Contig: 278,026 bp
  • Assembly Length: 893,751 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Edit genome data
Last modified 11 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2017-12-25
Location
Lat Lon: 24.541 N 102.895 E
Toponym
Geo Loc Name: China: Fuxian Lake, Yuxi
Environment
Sample Type: metagenomic assembly
Isolation Source: freshwater • freshwater sample F1-20
Other
Temp: 535 • 1
Package
Ncbi Submission Package: Microbe.1.0 • Metagenome.environmental.1.0
Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental
All retrieved samples
Metadata retrieved 11 months ago


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