SeqCode Registry
cognitis nomina
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Genomes
sc|0001492
JSON
Genome sc|0001492
Name
Shikimatogenerans bostrichidophilus
Database
NCBI Assembly
Accession
GCA_029851105.1
Genomics
Accession
NCBI Assembly:
GCA_029851105.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
100.0%
Contamination:
0.0%
Quality:
100.0
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
242.0 ×
Source
BioSample: SAMN28700317
Other features
G+C Content:
13.5%
Coding Density:
91.04%
Codon Table:
11
N50:
177,918 bp
Contigs:
1
Largest Contig:
177,918 bp
Assembly Length:
177,918 bp
Ambiguous Assembly Fraction:
0.065%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2014
Location
Not detected
Toponym
Geo Loc Name:
Germany: Berlin
Environment
Sample Type:
metagenomic assembly
Isolation Source:
beetle abdomen
Other
Host:
Dinoderus porcellus
Package
Ncbi Submission Package:
MIMAG.6.0
Biosamplemodel:
MIMAG
Additional Accessions
SAMN28175366
All retrieved samples
SAMN28700317
: MIMAG Metagenome-assembled Genome sample from Candidatus Shikimatogenerans bostrichidophilus
Metadata retrieved
8 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN28700317
×
Keywords: GSC:MIxS;MIMAG:6.0
collection_date
2014
metagenome_source
insect metagenome
organism
Candidatus Shikimatogenerans bostrichidophilus
environmental_sample
true
env_broad_scale
missing
metagenomic
true
sample_type
metagenomic assembly
env_local_scale
missing
isolate
DPOR1
NCBI submission package
MIMAG.6.0
host
Dinoderus porcellus
geo_loc_name
Germany: Berlin
env_medium
missing
lat_lon
missing
isolation_source
beetle abdomen
sample derived_from
SAMN28175366
BioSampleModel
MIMAG
ENA-FIRST-PUBLIC
2022-12-09
ENA-LAST-UPDATE
2023-04-24
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