Keywords: GSC:MIxS;MIMS:5.0

BioSample Accession(s)

SAMN13755912

collection_date

2017-05

NCBI submission package

MIMS.me.sediment.5.0

depth

1-100 cm

organism

marine sediment metagenome

elev

-5m to -48m

env_broad_scale

marine biome [ENVO:00000428]

geo_loc_name

India: Gulf of Kutch

env_medium

deep marine sediment [ENVO:00002113]

lat_lon

22.6 N 69.5 E

env_local_scale

marine pelagic biome [ENVO:01000023]

isolation_source

Pelagic sediment

BioSampleModel

MIGS/MIMS/MIMARKS.sediment

ENA-FIRST-PUBLIC

2020-05-31

ENA-LAST-UPDATE

2021-02-28

BioSample Accession(s)

SAMEA4646286, ERS2466931

ENA-CHECKLIST

ERC000027

Sampling Site

Pelagic Zone

Temperature

35

environment (material)

Sediment

organism

metagenome

Latitude End

22.69250000

environmental package

water

scientific_name

metagenome

Latitude Start

22.7443

Sampling Platform

Gravity corer

Longitude Start

69.9550

Depth

32

Salinity

40

Marine Region

Gulf

ENA-FIRST-PUBLIC

2020-04-14

project name

NPDF/2016/1239

ENA-LAST-UPDATE

2020-04-17

Protocol Label

GOKS

Event Date/Time

2017

Sampling Campaign

Gulf of Kutch

environment (biome)

Sediment

Longitude End

69.24944444

environment (feature)

Pelagic sediment

BioSample Accession(s)

SAMEA4646287, ERS2466932

ENA-CHECKLIST

ERC000027

Sampling Site

Pelagic Zone

Temperature

35

environment (material)

Sediment

organism

metagenome

Latitude End

22.62777778

environmental package

water

scientific_name

metagenome

Latitude Start

22.7443

Sampling Platform

Gravity corer

Longitude Start

69.9550

Depth

28

Salinity

40

Marine Region

Gulf

ENA-FIRST-PUBLIC

2020-04-14

project name

NPDF/2016/1239

ENA-LAST-UPDATE

2020-04-17

Protocol Label

GOKS

Event Date/Time

2017

Sampling Campaign

Gulf of Kutch

environment (biome)

Sediment

Longitude End

69.70805556

environment (feature)

Pelagic sediment

BioSample Accession(s)

SAMEA4646288, ERS2466933

ENA-CHECKLIST

ERC000027

Sampling Site

Pelagic Zone

Temperature

35

environment (material)

Sediment

organism

metagenome

Latitude End

22.81833333

environmental package

water

scientific_name

metagenome

Latitude Start

22.7443

Sampling Platform

Gravity corer

Longitude Start

69.9550

Depth

15

Salinity

40

Marine Region

Gulf

ENA-FIRST-PUBLIC

2020-04-14

project name

NPDF/2016/1239

ENA-LAST-UPDATE

2020-04-17

Protocol Label

GOKS

Event Date/Time

2017

Sampling Campaign

Gulf of Kutch

environment (biome)

Sediment

Longitude End

70.12555556

environment (feature)

Pelagic sediment

BioSample Accession(s)

SAMEA4646289, ERS2466934

ENA-CHECKLIST

ERC000027

Sampling Site

Pelagic Zone

Temperature

35

environment (material)

Sediment

organism

metagenome

Latitude End

22.95138889

environmental package

water

scientific_name

metagenome

Latitude Start

22.7443

Sampling Platform

Gravity corer

Longitude Start

69.9550

Depth

5

Salinity

40

Marine Region

Gulf

ENA-FIRST-PUBLIC

2020-04-14

project name

NPDF/2016/1239

ENA-LAST-UPDATE

2020-04-17

Protocol Label

GOKS

Event Date/Time

2017

Sampling Campaign

Gulf of Kutch

environment (biome)

Sediment

Longitude End

70.40638889

environment (feature)

Pelagic sediment

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="ERX2582350" alias="ena-EXPERIMENT-Maharaja Krishnakumarsinhji BHavnagar University-05-05-2018-09:10:07:071-1" center_name="Maharaja Krishnakumarsinhji BHavnagar University">
  <IDENTIFIERS>
    <PRIMARY_ID>ERX2582350</PRIMARY_ID>
    <SUBMITTER_ID namespace="Maharaja Krishnakumarsinhji BHavnagar University">ena-EXPERIMENT-Maharaja Krishnakumarsinhji BHavnagar University-05-05-2018-09:10:07:071-1</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 4000 paired end sequencing</TITLE>
  <STUDY_REF accession="ERP108617">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP108617</PRIMARY_ID>
      <SECONDARY_ID>PRJEB26615</SECONDARY_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="ERS2466931">
      <IDENTIFIERS>
        <PRIMARY_ID>ERS2466931</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMEA4646286</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>unspecified</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED NOMINAL_LENGTH="101"/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 4000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>ERS2466931</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>ERA1435866</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX2582350&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX2582350&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="ERX2582351" alias="ena-EXPERIMENT-Maharaja Krishnakumarsinhji BHavnagar University-05-05-2018-09:10:07:071-2" center_name="Maharaja Krishnakumarsinhji BHavnagar University">
  <IDENTIFIERS>
    <PRIMARY_ID>ERX2582351</PRIMARY_ID>
    <SUBMITTER_ID namespace="Maharaja Krishnakumarsinhji BHavnagar University">ena-EXPERIMENT-Maharaja Krishnakumarsinhji BHavnagar University-05-05-2018-09:10:07:071-2</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 4000 paired end sequencing</TITLE>
  <STUDY_REF accession="ERP108617">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP108617</PRIMARY_ID>
      <SECONDARY_ID>PRJEB26615</SECONDARY_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="ERS2466932">
      <IDENTIFIERS>
        <PRIMARY_ID>ERS2466932</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMEA4646287</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>unspecified</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED NOMINAL_LENGTH="101"/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 4000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>ERS2466932</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>ERA1435866</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX2582351&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX2582351&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="ERX2582352" alias="ena-EXPERIMENT-Maharaja Krishnakumarsinhji BHavnagar University-05-05-2018-09:10:07:071-3" center_name="Maharaja Krishnakumarsinhji BHavnagar University">
  <IDENTIFIERS>
    <PRIMARY_ID>ERX2582352</PRIMARY_ID>
    <SUBMITTER_ID namespace="Maharaja Krishnakumarsinhji BHavnagar University">ena-EXPERIMENT-Maharaja Krishnakumarsinhji BHavnagar University-05-05-2018-09:10:07:071-3</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 4000 paired end sequencing</TITLE>
  <STUDY_REF accession="ERP108617">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP108617</PRIMARY_ID>
      <SECONDARY_ID>PRJEB26615</SECONDARY_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="ERS2466933">
      <IDENTIFIERS>
        <PRIMARY_ID>ERS2466933</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMEA4646288</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>unspecified</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED NOMINAL_LENGTH="101"/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 4000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>ERS2466933</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>ERA1435866</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX2582352&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX2582352&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="ERX2582353" alias="ena-EXPERIMENT-Maharaja Krishnakumarsinhji BHavnagar University-05-05-2018-09:10:07:071-4" center_name="Maharaja Krishnakumarsinhji BHavnagar University">
  <IDENTIFIERS>
    <PRIMARY_ID>ERX2582353</PRIMARY_ID>
    <SUBMITTER_ID namespace="Maharaja Krishnakumarsinhji BHavnagar University">ena-EXPERIMENT-Maharaja Krishnakumarsinhji BHavnagar University-05-05-2018-09:10:07:071-4</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 4000 paired end sequencing</TITLE>
  <STUDY_REF accession="ERP108617">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP108617</PRIMARY_ID>
      <SECONDARY_ID>PRJEB26615</SECONDARY_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="ERS2466934">
      <IDENTIFIERS>
        <PRIMARY_ID>ERS2466934</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMEA4646289</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>unspecified</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED NOMINAL_LENGTH="101"/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 4000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>ERS2466934</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>ERA1435866</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX2582353&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX2582353&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>