JSON

Genome sc|0001509

Name

Not registered

Database

NCBI Assembly

Accession

JAZHEJ000000000

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:JAZHEJ000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.69%
  • Contamination: 0.0%
  • Quality: 95.69
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
5.5 ×
Source
Other features
  • G+C Content: 50.32%
Submitter comments
CheckM was employed to estimate genome completeness and contamination using the taxon-specific workflow.
The Integrated Microbial Genome (IMG) pipeline was used to determine number and type of RNA genes in assembly.


Automated checks
Failed: Cannot find ncbi:assembly:JAZHEJ000000000
Edit genome data
Last modified 11 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2009-09-15
Location
Lat Lon: 33.991019 S 151.232503 E
Toponym
Geo Loc Name: Australia: NSW, Sydney, Bare Island
Environment
Isolation Source: MAG sequenced from bacterial pellet from marine sponge
Env Broad Scale: marine biome [ENVO:00000447]|marine benthic biome[ENVO:01000024]|marine subtidal rocky reef biome[ENVO:01000050]
Env Local Scale: coastal sea water[ENVO:00002150]
Env Medium: coastal sea water[ENVO:00002150]
Other
Not detected
Package
Ncbi Submission Package: MIMAG.symbiont-associated.6.0
Biosamplemodel: MIMAG.symbiont-associated
Additional Accessions
SAMN13301258 Append as BioSamples
All retrieved samples
Metadata retrieved 11 months ago


© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license