JSON

Genome sc|0001509

Database

NCBI Assembly

Accession

JAZHEJ000000000

Genomics

Accession
NCBI Assembly:JAZHEJ000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.69%
  • Contamination: 0.0%
  • Quality: 95.69
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
5.5 ×
Source
Other features
  • G+C Content: 50.32%
Submitter comments
CheckM was employed to estimate genome completeness and contamination using the taxon-specific workflow.
The Integrated Microbial Genome (IMG) pipeline was used to determine number and type of RNA genes in assembly.


Automated checks
Failed: Cannot find ncbi:assembly:JAZHEJ000000000

Sample Metadata

Date
Collection Date: 2009-09-15
Location
Lat Lon: 33.991019 S 151.232503 E
Toponym
Geo Loc Name: Australia: NSW, Sydney, Bare Island
Environment
Isolation Source: MAG sequenced from bacterial pellet from marine sponge
Env Broad Scale: marine biome [ENVO:00000447]|marine benthic biome[ENVO:01000024]|marine subtidal rocky reef biome[ENVO:01000050]
Env Local Scale: coastal sea water[ENVO:00002150]
Env Medium: coastal sea water[ENVO:00002150]
Other
Not detected
Package
Ncbi Submission Package: MIMAG.symbiont-associated.6.0
Biosamplemodel: MIMAG.symbiont-associated
Additional Accessions
SAMN13301258 Append as BioSamples
All retrieved samples
Metadata retrieved 8 months ago


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