Genome sc|0000152


Database

NCBI Assembly

Accession

GCA_003176995.1

Genomics

Accession
NCBI Assembly:GCA_003176995.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.8%
  • Contamination: 3.9%
  • Quality: 71.3
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 38.6%
  • Coding Density: 70.18%
  • Codon Table: 11
  • N50: 22,997 bp
  • Contigs: 278
  • Largest Contig: 110,406 bp
  • Assembly Length: 3,969,448 bp
  • Ambiguous Assembly Fraction: 0.0068%
Automated checks
Complete

Last modified 8 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2005-12-13
Location
Lat Lon: 66.3695 S 110.5856 E • 66.369468 S 110.585626 E • 66.369451 S 110.585574 E • 66.369467 S 110.585574 E
Toponym
Geo Loc Name: Antarctica:Robinson Ridge
Environment
Env Material: soil
Sample Type: metagenomic assembly
Env Biome: desert
Isolation Source: pooled data from three different soil samples • soil
Other
Depth: 0-10 cm
Package
Ncbi Submission Package: Microbe.1.0MIMS.me.soil.5.0Metagenome.environmental.1.0
Biosamplemodel: Microbe, viral or environmental • MIGS/MIMS/MIMARKS.soil • Metagenome or environmental
All retrieved samples

Metadata retrieved 8 days ago

Sequencing Experiments

soil metagenome
soil metagenome
soil metagenome


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