SeqCode Registry
cognitis nomina
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Genomes
sc|0000152
JSON
Genome sc|0000152
Name
Nitrosopolaris wilkesensis
Ts
Database
NCBI Assembly
Accession
GCA_003176995.1
Genomics
Accession
NCBI Assembly:
GCA_003176995.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
90.8%
Contamination:
3.9%
Quality:
71.3
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
BioSample: SAMN09209451
Other features
G+C Content:
38.6%
Coding Density:
70.18%
Codon Table:
11
N50:
22,997 bp
Contigs:
278
Largest Contig:
110,406 bp
Assembly Length:
3,969,448 bp
Ambiguous Assembly Fraction:
0.0068%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2005-12-13
Location
Lat Lon:
66.3695 S 110.5856 E
Toponym
Geo Loc Name:
Antarctica:Robinson Ridge
Environment
Sample Type:
metagenomic assembly
Isolation Source:
pooled data from three different soil samples
Other
Not detected
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SAMN09209451
: Microbe sample from Nitrososphaerota archaeon
Metadata retrieved
9 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN09209451
×
Recovered from metagenome
isolate
RRmetagenome_bin19
note
This BioSample is a metagenomic assembly obtained from the soil metagenome BioSample: SAMN06286369, SAMN06286541, SAMN06286542.
NCBI submission package
Microbe.1.0
lat lon
66.3695 S 110.5856 E
organism
Nitrososphaerota archaeon
collection date
2005-12-13
isolation source
pooled data from three different soil samples
geo loc name
Antarctica:Robinson Ridge
metagenomic
TRUE
environmental sample
TRUE
sample type
metagenomic assembly
metagenome source
soil metagenome
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2018-05-15
ENA-LAST-UPDATE
2023-03-07
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