JSON

Genome sc|0001537

Name

Electronema aureumTs

Database

NCBI Assembly

Accession

GCA_004284765.1

Genomics

Accession
NCBI Assembly:GCA_004284765.1
Type
Enrichment Genome
Estimated Quality Metrics
  • Completeness: 93.0%
  • Contamination: 1.59%
  • Quality: 85.05
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
111.0 ×
Source
Other features
  • G+C Content: 52.0%
  • Coding Density: 88.04%
  • Codon Table: 11
  • N50: 58,414 bp
  • Contigs: 73
  • Largest Contig: 231,366 bp
  • Assembly Length: 2,762,383 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Illumina sequencing (2x 300 bp) of DNA from 5 separate samples of a freshwater cable bacterium enrichment culture. A metagenome was assembled from the pooled libraries by IDBA v. 1.1.1, from which the E. aureum genome was extracted. Quality checks were by CheckM.
Automated checks
Complete
Last modified 10 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2015-01-08
Location
Lat Lon: 56.164874 N 10.207888 E
Toponym
Geo Loc Name: Denmark: Vennelystparken
Environment
Sample Type: metagenomic assembly
Isolation Source: freshwater sediment
Other
Rel To Oxygen: aerobe
Package
Ncbi Submission Package: Microbe.1.0 • Metagenome.environmental.1.0
Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental
All retrieved samples
Metadata retrieved 10 days ago


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