JSON

Genome sc|0001541

Name

Not registered

Database

NCBI Assembly

Accession

GCA_031458735.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_031458735.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.2% (automated estimate: 90.6%)
  • Contamination: 2.78% (automated estimate: 0.9%)
  • Quality: 77.3 (automated estimate: 86.1)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 29.0%)
  • 0 23S rRNAs
  • tRNAs for 21 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 69.41% (automated estimate: 69.38%)
  • Coding Density: 94.5%
  • Codon Table: 11
  • N50: 121,152 bp
  • Contigs: 31
  • Largest Contig: 237,828 bp
  • Assembly Length: 2,430,881 bp
  • Ambiguous Assembly Fraction: 0.032%
Automated checks
Complete
Edit genome data
Last modified 11 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2017-05
Location
Lat Lon: 24.95 N 98.44 E
Toponym
Geo Loc Name: China: Tengchong county, Yunnan, QQ
Environment
Sample Type: metagenomic assembly
Isolation Source: Hot spring sediment
Env Broad Scale: Hot spring
Env Local Scale: Hot spring sediment
Env Medium: Hot spring sediment
Other
Depth: Surface
Package
Ncbi Submission Package: MIMAG.sediment.6.0
Biosamplemodel: MIMAG.sediment
Additional Accessions
SAMN35165540 Append as BioSamples
All retrieved samples
Metadata retrieved 11 months ago


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